miRNA display CGI


Results 21 - 40 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 62469 0.7 0.333408
Target:  5'- ---cCCCAGCGC-GGCGgcCUGCGuCCAGa -3'
miRNA:   3'- cucaGGGUCGCGuCCGC--GACGC-GGUC- -5'
21585 3' -62.7 NC_004812.1 + 71181 0.71 0.325464
Target:  5'- uGGUCCCGGCGCugacgguAGGUGaa-CGCCAGg -3'
miRNA:   3'- cUCAGGGUCGCG-------UCCGCgacGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 153347 0.72 0.278223
Target:  5'- -cGUCUCcucgggcggcgggGGCGCGGGCGCcccuggcggGCGCCGGg -3'
miRNA:   3'- cuCAGGG-------------UCGCGUCCGCGa--------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 41158 0.74 0.196045
Target:  5'- cGAG-CCCAGCGgcgcgccgcCAGGCGCUcucggcgccGCGCCGGu -3'
miRNA:   3'- -CUCaGGGUCGC---------GUCCGCGA---------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 130711 0.69 0.395383
Target:  5'- -cGcCCgCGGCGCuGGGCGCggGCGCCGc -3'
miRNA:   3'- cuCaGG-GUCGCG-UCCGCGa-CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 128157 0.7 0.371287
Target:  5'- cGGaCCgGGuCGCGcGGCGCUGCGUCGGc -3'
miRNA:   3'- cUCaGGgUC-GCGU-CCGCGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 38613 0.71 0.31907
Target:  5'- cGAGUCCgCGGCGgGGGUcuCcGCGCCGGg -3'
miRNA:   3'- -CUCAGG-GUCGCgUCCGc-GaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 3837 0.75 0.173622
Target:  5'- aGGUCCCcGCGCAGGCGCaugaGCaCCAGc -3'
miRNA:   3'- cUCAGGGuCGCGUCCGCGa---CGcGGUC- -5'
21585 3' -62.7 NC_004812.1 + 98530 0.7 0.370502
Target:  5'- cGGGUUCguGUGCGcggccucGGCGCcggGCGCCGGg -3'
miRNA:   3'- -CUCAGGguCGCGU-------CCGCGa--CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 97554 0.76 0.157359
Target:  5'- cAGUUCCAGC-C-GGUGCUGCGCCGGc -3'
miRNA:   3'- cUCAGGGUCGcGuCCGCGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 4629 0.71 0.319775
Target:  5'- cGGGcgCCCacacgGGCGCGGGCGCgccggcggccucguaGCGCCGGc -3'
miRNA:   3'- -CUCa-GGG-----UCGCGUCCGCGa--------------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 46897 0.7 0.348213
Target:  5'- -cGcCCCGGgGCGGGCGCgGCgGCCGc -3'
miRNA:   3'- cuCaGGGUCgCGUCCGCGaCG-CGGUc -5'
21585 3' -62.7 NC_004812.1 + 2363 0.71 0.298439
Target:  5'- cGGG-CCCGGCGCGcgcGGCGUcgcgguccaGCGCCAGg -3'
miRNA:   3'- -CUCaGGGUCGCGU---CCGCGa--------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 43667 0.72 0.278858
Target:  5'- --uUCaCCAGCGaCAcGGCGCUGCGCgGGc -3'
miRNA:   3'- cucAG-GGUCGC-GU-CCGCGACGCGgUC- -5'
21585 3' -62.7 NC_004812.1 + 78990 0.72 0.254359
Target:  5'- cGGUUUaCAGCGCcaAGGCGCUGCugGCCGGg -3'
miRNA:   3'- cUCAGG-GUCGCG--UCCGCGACG--CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 156125 0.74 0.205702
Target:  5'- uGAGUUCgGGCaGCAGGCGCgUGCGCacgCAGg -3'
miRNA:   3'- -CUCAGGgUCG-CGUCCGCG-ACGCG---GUC- -5'
21585 3' -62.7 NC_004812.1 + 2428 0.69 0.411998
Target:  5'- ---cCCCAgcgcGCGCAGGCGCggugcgagUGCGCCu- -3'
miRNA:   3'- cucaGGGU----CGCGUCCGCG--------ACGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 105654 0.69 0.411157
Target:  5'- gGGGUacacCCCGGCGUgguggugGGGCGCguaCGCCGGg -3'
miRNA:   3'- -CUCA----GGGUCGCG-------UCCGCGac-GCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 135819 0.69 0.395383
Target:  5'- cGG-CCUGGCGCAGcGC-CUGCGCUGGg -3'
miRNA:   3'- cUCaGGGUCGCGUC-CGcGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 89295 0.7 0.382407
Target:  5'- gGAGcCCCGGCGUc-GCGCUucgcgcaguucugcgGCGCCGGg -3'
miRNA:   3'- -CUCaGGGUCGCGucCGCGA---------------CGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.