Results 41 - 60 of 262 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 1479 | 0.69 | 0.395383 |
Target: 5'- -cGUCCuCGGCGgGcggcGGCGgaGCGCCGGc -3' miRNA: 3'- cuCAGG-GUCGCgU----CCGCgaCGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 38613 | 0.71 | 0.31907 |
Target: 5'- cGAGUCCgCGGCGgGGGUcuCcGCGCCGGg -3' miRNA: 3'- -CUCAGG-GUCGCgUCCGc-GaCGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 3837 | 0.75 | 0.173622 |
Target: 5'- aGGUCCCcGCGCAGGCGCaugaGCaCCAGc -3' miRNA: 3'- cUCAGGGuCGCGUCCGCGa---CGcGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 80267 | 0.69 | 0.395383 |
Target: 5'- cGGaCCUGGCGguGGCGgUGCGgCGGg -3' miRNA: 3'- cUCaGGGUCGCguCCGCgACGCgGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 97554 | 0.76 | 0.157359 |
Target: 5'- cAGUUCCAGC-C-GGUGCUGCGCCGGc -3' miRNA: 3'- cUCAGGGUCGcGuCCGCGACGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 107417 | 0.68 | 0.473379 |
Target: 5'- uGAGcaugCCCAGCuGCAGGCGgUUGU-CCAGg -3' miRNA: 3'- -CUCa---GGGUCG-CGUCCGC-GACGcGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 156125 | 0.74 | 0.205702 |
Target: 5'- uGAGUUCgGGCaGCAGGCGCgUGCGCacgCAGg -3' miRNA: 3'- -CUCAGGgUCG-CGUCCGCG-ACGCG---GUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 55304 | 0.68 | 0.464322 |
Target: 5'- cGAGgugggCUCGGCGCGGGCcgacGCccggGCGUCGGa -3' miRNA: 3'- -CUCa----GGGUCGCGUCCG----CGa---CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 153743 | 0.68 | 0.455357 |
Target: 5'- cGGUgCCGGCGCGcacggcguccucGGCGUcGCGCCGc -3' miRNA: 3'- cUCAgGGUCGCGU------------CCGCGaCGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 135020 | 0.68 | 0.445604 |
Target: 5'- cAGUCCCuggggcgGGUGCGGaCGCUGCGUCuGg -3' miRNA: 3'- cUCAGGG-------UCGCGUCcGCGACGCGGuC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 151908 | 0.68 | 0.43684 |
Target: 5'- -cGUCCUcGCGCggcgggccggGGGCGCUccccucgGCGCCGGc -3' miRNA: 3'- cuCAGGGuCGCG----------UCCGCGA-------CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 2428 | 0.69 | 0.411998 |
Target: 5'- ---cCCCAgcgcGCGCAGGCGCggugcgagUGCGCCu- -3' miRNA: 3'- cucaGGGU----CGCGUCCGCG--------ACGCGGuc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 105654 | 0.69 | 0.411157 |
Target: 5'- gGGGUacacCCCGGCGUgguggugGGGCGCguaCGCCGGg -3' miRNA: 3'- -CUCA----GGGUCGCG-------UCCGCGac-GCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 29238 | 0.69 | 0.387239 |
Target: 5'- gGGGUCgCGGaggaGCGGGCcgggGCUGCGCgGGg -3' miRNA: 3'- -CUCAGgGUCg---CGUCCG----CGACGCGgUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 98530 | 0.7 | 0.370502 |
Target: 5'- cGGGUUCguGUGCGcggccucGGCGCcggGCGCCGGg -3' miRNA: 3'- -CUCAGGguCGCGU-------CCGCGa--CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 62469 | 0.7 | 0.333408 |
Target: 5'- ---cCCCAGCGC-GGCGgcCUGCGuCCAGa -3' miRNA: 3'- cucaGGGUCGCGuCCGC--GACGC-GGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 71181 | 0.71 | 0.325464 |
Target: 5'- uGGUCCCGGCGCugacgguAGGUGaa-CGCCAGg -3' miRNA: 3'- cUCAGGGUCGCG-------UCCGCgacGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 2363 | 0.71 | 0.298439 |
Target: 5'- cGGG-CCCGGCGCGcgcGGCGUcgcgguccaGCGCCAGg -3' miRNA: 3'- -CUCaGGGUCGCGU---CCGCGa--------CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 43667 | 0.72 | 0.278858 |
Target: 5'- --uUCaCCAGCGaCAcGGCGCUGCGCgGGc -3' miRNA: 3'- cucAG-GGUCGC-GU-CCGCGACGCGgUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 78990 | 0.72 | 0.254359 |
Target: 5'- cGGUUUaCAGCGCcaAGGCGCUGCugGCCGGg -3' miRNA: 3'- cUCAGG-GUCGCG--UCCGCGACG--CGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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