miRNA display CGI


Results 61 - 80 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 105654 0.69 0.411157
Target:  5'- gGGGUacacCCCGGCGUgguggugGGGCGCguaCGCCGGg -3'
miRNA:   3'- -CUCA----GGGUCGCG-------UCCGCGac-GCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 125 0.68 0.435969
Target:  5'- -cGUCCCucgcgagugcgcGCGCGuGGCGCcGCGCCGc -3'
miRNA:   3'- cuCAGGGu-----------CGCGU-CCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 3728 0.73 0.231655
Target:  5'- gGAGcgcaCCUGGCGCGGGcCGC-GCGCCAGc -3'
miRNA:   3'- -CUCa---GGGUCGCGUCC-GCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 48112 0.72 0.254359
Target:  5'- ---gCCCcGUGCGGGCGCUGgCGCCGu -3'
miRNA:   3'- cucaGGGuCGCGUCCGCGAC-GCGGUc -5'
21585 3' -62.7 NC_004812.1 + 140512 0.72 0.285269
Target:  5'- -cGUCUC-GCGCAGGCGCUcgaugGUGCCGa -3'
miRNA:   3'- cuCAGGGuCGCGUCCGCGA-----CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 105084 0.71 0.312076
Target:  5'- ---cCCCGGCGC---CGCUGCGCCGGg -3'
miRNA:   3'- cucaGGGUCGCGuccGCGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 137844 0.71 0.32618
Target:  5'- aGGUCCUGGCGCuGGCGacggacgaggUGCGCCGc -3'
miRNA:   3'- cUCAGGGUCGCGuCCGCg---------ACGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 46897 0.7 0.348213
Target:  5'- -cGcCCCGGgGCGGGCGCgGCgGCCGc -3'
miRNA:   3'- cuCaGGGUCgCGUCCGCGaCG-CGGUc -5'
21585 3' -62.7 NC_004812.1 + 128157 0.7 0.371287
Target:  5'- cGGaCCgGGuCGCGcGGCGCUGCGUCGGc -3'
miRNA:   3'- cUCaGGgUC-GCGU-CCGCGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 27344 0.69 0.388049
Target:  5'- -cGUCgCCGGCGCcgccgcgccgcugcuGGCGCgcggcccGCGCCAGg -3'
miRNA:   3'- cuCAG-GGUCGCGu--------------CCGCGa------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 74379 0.67 0.529435
Target:  5'- cGAGUCggccgaaCGGCGCuucGGCGC-GgGCCGGg -3'
miRNA:   3'- -CUCAGg------GUCGCGu--CCGCGaCgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 100823 0.67 0.519908
Target:  5'- -cGUCUCgGGgGCGGGCGCcGCgacGCCGGg -3'
miRNA:   3'- cuCAGGG-UCgCGUCCGCGaCG---CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 124906 0.68 0.437712
Target:  5'- cGAGgCCCuGaCGgAGGC-CUGCGCCGGc -3'
miRNA:   3'- -CUCaGGGuC-GCgUCCGcGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 138029 0.68 0.446486
Target:  5'- ----gCCGGCGCGGGUGCgGCGgCGGc -3'
miRNA:   3'- cucagGGUCGCGUCCGCGaCGCgGUC- -5'
21585 3' -62.7 NC_004812.1 + 55304 0.68 0.464322
Target:  5'- cGAGgugggCUCGGCGCGGGCcgacGCccggGCGUCGGa -3'
miRNA:   3'- -CUCa----GGGUCGCGUCCG----CGa---CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 107417 0.68 0.473379
Target:  5'- uGAGcaugCCCAGCuGCAGGCGgUUGU-CCAGg -3'
miRNA:   3'- -CUCa---GGGUCG-CGUCCGC-GACGcGGUC- -5'
21585 3' -62.7 NC_004812.1 + 13494 0.67 0.491752
Target:  5'- -cGUCCguCAGCGcCAGGCGCgGgGCCc- -3'
miRNA:   3'- cuCAGG--GUCGC-GUCCGCGaCgCGGuc -5'
21585 3' -62.7 NC_004812.1 + 137563 0.67 0.491752
Target:  5'- cGGUCUCGGcCGCcgcggccgagAGGCugccgcccgcGCUGCGCCGGc -3'
miRNA:   3'- cUCAGGGUC-GCG----------UCCG----------CGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 30949 0.67 0.501062
Target:  5'- cGGGcCgCgGGCGCGgcGGCGCgGCGCCAc -3'
miRNA:   3'- -CUCaG-GgUCGCGU--CCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 19530 0.67 0.510448
Target:  5'- cGAG-CCCGGCGUcaGGGCGCgGUGgaucgcgaagcCCAGg -3'
miRNA:   3'- -CUCaGGGUCGCG--UCCGCGaCGC-----------GGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.