miRNA display CGI


Results 81 - 100 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 59666 0.68 0.446486
Target:  5'- cGGg-CCGGCGCGGGCGCcGCGUUg- -3'
miRNA:   3'- cUCagGGUCGCGUCCGCGaCGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 5385 0.68 0.464322
Target:  5'- cGAGUCgCGGCGCGGG-GCcggggGCGUCGc -3'
miRNA:   3'- -CUCAGgGUCGCGUCCgCGa----CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 144096 0.68 0.464322
Target:  5'- gGAGUCCCcGCuGCcguacguGGUGCUGCGCg-- -3'
miRNA:   3'- -CUCAGGGuCG-CGu------CCGCGACGCGguc -5'
21585 3' -62.7 NC_004812.1 + 68453 0.68 0.482523
Target:  5'- gGGGcUCCCGGUGguGGcCGCgGCGCgCAc -3'
miRNA:   3'- -CUC-AGGGUCGCguCC-GCGaCGCG-GUc -5'
21585 3' -62.7 NC_004812.1 + 23400 0.67 0.491752
Target:  5'- cGAGcgUCCGGCGaCGGGCGUccggcgGCGUCGGc -3'
miRNA:   3'- -CUCa-GGGUCGC-GUCCGCGa-----CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 30949 0.67 0.501062
Target:  5'- cGGGcCgCgGGCGCGgcGGCGCgGCGCCAc -3'
miRNA:   3'- -CUCaG-GgUCGCGU--CCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 19530 0.67 0.510448
Target:  5'- cGAG-CCCGGCGUcaGGGCGCgGUGgaucgcgaagcCCAGg -3'
miRNA:   3'- -CUCaGGGUCGCG--UCCGCGaCGC-----------GGUC- -5'
21585 3' -62.7 NC_004812.1 + 27344 0.69 0.388049
Target:  5'- -cGUCgCCGGCGCcgccgcgccgcugcuGGCGCgcggcccGCGCCAGg -3'
miRNA:   3'- cuCAG-GGUCGCGu--------------CCGCGa------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 128157 0.7 0.371287
Target:  5'- cGGaCCgGGuCGCGcGGCGCUGCGUCGGc -3'
miRNA:   3'- cUCaGGgUC-GCGU-CCGCGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 46897 0.7 0.348213
Target:  5'- -cGcCCCGGgGCGGGCGCgGCgGCCGc -3'
miRNA:   3'- cuCaGGGUCgCGUCCGCGaCG-CGGUc -5'
21585 3' -62.7 NC_004812.1 + 141238 0.67 0.536142
Target:  5'- aGGUCCCuggggagggcguGGuCGCuaaggaacgccuccAGGCGCUGCGUCAc -3'
miRNA:   3'- cUCAGGG------------UC-GCG--------------UCCGCGACGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 106748 0.66 0.545774
Target:  5'- -cGUCCgGGCGCgggggggucggaggAGGgGCgGCGUCGGg -3'
miRNA:   3'- cuCAGGgUCGCG--------------UCCgCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 107132 0.66 0.548675
Target:  5'- cGAGcUCCAGCGCcgucAGGCGaaccaGCGCCGc -3'
miRNA:   3'- -CUCaGGGUCGCG----UCCGCga---CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 82388 0.66 0.568127
Target:  5'- gGAGaCCCGGgGCcccuGGaGCUGCGCgAGg -3'
miRNA:   3'- -CUCaGGGUCgCGu---CCgCGACGCGgUC- -5'
21585 3' -62.7 NC_004812.1 + 47268 0.66 0.568127
Target:  5'- cGAGUCUaCGGCGCcccgguaGCGCgGCGCCGc -3'
miRNA:   3'- -CUCAGG-GUCGCGuc-----CGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 3728 0.73 0.231655
Target:  5'- gGAGcgcaCCUGGCGCGGGcCGC-GCGCCAGc -3'
miRNA:   3'- -CUCa---GGGUCGCGUCC-GCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 48112 0.72 0.254359
Target:  5'- ---gCCCcGUGCGGGCGCUGgCGCCGu -3'
miRNA:   3'- cucaGGGuCGCGUCCGCGAC-GCGGUc -5'
21585 3' -62.7 NC_004812.1 + 140512 0.72 0.285269
Target:  5'- -cGUCUC-GCGCAGGCGCUcgaugGUGCCGa -3'
miRNA:   3'- cuCAGGGuCGCGUCCGCGA-----CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 105084 0.71 0.312076
Target:  5'- ---cCCCGGCGC---CGCUGCGCCGGg -3'
miRNA:   3'- cucaGGGUCGCGuccGCGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 137844 0.71 0.32618
Target:  5'- aGGUCCUGGCGCuGGCGacggacgaggUGCGCCGc -3'
miRNA:   3'- cUCAGGGUCGCGuCCGCg---------ACGCGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.