Results 101 - 120 of 262 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21585 | 3' | -62.7 | NC_004812.1 | + | 3524 | 0.66 | 0.558377 |
Target: 5'- cGGcCCCgGGgGCGGGgcCGCgGCGCCGGg -3' miRNA: 3'- cUCaGGG-UCgCGUCC--GCGaCGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 55957 | 0.66 | 0.568127 |
Target: 5'- cGAGgCCCGGC-CcGGCGCggcucGCGCCGc -3' miRNA: 3'- -CUCaGGGUCGcGuCCGCGa----CGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 47047 | 0.66 | 0.577919 |
Target: 5'- gGGGUUUgcGUGCGGGCGUccUGCGUCAGc -3' miRNA: 3'- -CUCAGGguCGCGUCCGCG--ACGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 148280 | 0.66 | 0.577919 |
Target: 5'- ---gCCCGGCaGCGcGGCgGCgGCGCCGGc -3' miRNA: 3'- cucaGGGUCG-CGU-CCG-CGaCGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 30391 | 0.66 | 0.587748 |
Target: 5'- cGGGg-CCGGCGCccGGGCuGCcGCGCCGa -3' miRNA: 3'- -CUCagGGUCGCG--UCCG-CGaCGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 68453 | 0.68 | 0.482523 |
Target: 5'- gGGGcUCCCGGUGguGGcCGCgGCGCgCAc -3' miRNA: 3'- -CUC-AGGGUCGCguCC-GCGaCGCG-GUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 144096 | 0.68 | 0.464322 |
Target: 5'- gGAGUCCCcGCuGCcguacguGGUGCUGCGCg-- -3' miRNA: 3'- -CUCAGGGuCG-CGu------CCGCGACGCGguc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 3728 | 0.73 | 0.231655 |
Target: 5'- gGAGcgcaCCUGGCGCGGGcCGC-GCGCCAGc -3' miRNA: 3'- -CUCa---GGGUCGCGUCC-GCGaCGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 48112 | 0.72 | 0.254359 |
Target: 5'- ---gCCCcGUGCGGGCGCUGgCGCCGu -3' miRNA: 3'- cucaGGGuCGCGUCCGCGAC-GCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 140512 | 0.72 | 0.285269 |
Target: 5'- -cGUCUC-GCGCAGGCGCUcgaugGUGCCGa -3' miRNA: 3'- cuCAGGGuCGCGUCCGCGA-----CGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 105084 | 0.71 | 0.312076 |
Target: 5'- ---cCCCGGCGC---CGCUGCGCCGGg -3' miRNA: 3'- cucaGGGUCGCGuccGCGACGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 137844 | 0.71 | 0.32618 |
Target: 5'- aGGUCCUGGCGCuGGCGacggacgaggUGCGCCGc -3' miRNA: 3'- cUCAGGGUCGCGuCCGCg---------ACGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 46897 | 0.7 | 0.348213 |
Target: 5'- -cGcCCCGGgGCGGGCGCgGCgGCCGc -3' miRNA: 3'- cuCaGGGUCgCGUCCGCGaCG-CGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 128157 | 0.7 | 0.371287 |
Target: 5'- cGGaCCgGGuCGCGcGGCGCUGCGUCGGc -3' miRNA: 3'- cUCaGGgUC-GCGU-CCGCGACGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 27344 | 0.69 | 0.388049 |
Target: 5'- -cGUCgCCGGCGCcgccgcgccgcugcuGGCGCgcggcccGCGCCAGg -3' miRNA: 3'- cuCAG-GGUCGCGu--------------CCGCGa------CGCGGUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 18718 | 0.69 | 0.411998 |
Target: 5'- uAGcUCCgCGGCGCugGGGCGCcgcGCGCCAu -3' miRNA: 3'- cUC-AGG-GUCGCG--UCCGCGa--CGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 21158 | 0.69 | 0.417914 |
Target: 5'- gGGGUCUCGGCGUgccgcgggacgccgAGGCGC-GCGUCGu -3' miRNA: 3'- -CUCAGGGUCGCG--------------UCCGCGaCGCGGUc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 153252 | 0.68 | 0.437712 |
Target: 5'- gGGGuUCCCGGCGgGGGcCGggGCGCgGGg -3' miRNA: 3'- -CUC-AGGGUCGCgUCC-GCgaCGCGgUC- -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 59666 | 0.68 | 0.446486 |
Target: 5'- cGGg-CCGGCGCGGGCGCcGCGUUg- -3' miRNA: 3'- cUCagGGUCGCGUCCGCGaCGCGGuc -5' |
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21585 | 3' | -62.7 | NC_004812.1 | + | 5385 | 0.68 | 0.464322 |
Target: 5'- cGAGUCgCGGCGCGGG-GCcggggGCGUCGc -3' miRNA: 3'- -CUCAGgGUCGCGUCCgCGa----CGCGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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