miRNA display CGI


Results 21 - 40 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 121906 0.66 0.594646
Target:  5'- cAGgCCgGGCGCGGGC-CUgaggucgggccugaGCGCCGGg -3'
miRNA:   3'- cUCaGGgUCGCGUCCGcGA--------------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 142195 0.66 0.587748
Target:  5'- ----gCCGGCGCGGG-GCUGgcCGCCGGc -3'
miRNA:   3'- cucagGGUCGCGUCCgCGAC--GCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 36371 0.66 0.587748
Target:  5'- uGGG-CgCAGCcgaagacggGCAGGgGCUGgGCCGGg -3'
miRNA:   3'- -CUCaGgGUCG---------CGUCCgCGACgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 113473 0.66 0.587748
Target:  5'- cGGaCCCuGCGgGaguGcGUGCUGCGCCAGg -3'
miRNA:   3'- cUCaGGGuCGCgU---C-CGCGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 113779 0.66 0.587748
Target:  5'- ---aCCCuuGUGCGGGuCGUUGCGCCc- -3'
miRNA:   3'- cucaGGGu-CGCGUCC-GCGACGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 156020 0.66 0.587748
Target:  5'- aGGGgacgCCCGGgGcCGGGgGCcGCGCCGc -3'
miRNA:   3'- -CUCa---GGGUCgC-GUCCgCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 108554 0.66 0.587748
Target:  5'- cGAGUCgCuGCGCucgcugguGGCGC-GCGCCc- -3'
miRNA:   3'- -CUCAGgGuCGCGu-------CCGCGaCGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 69837 0.66 0.587748
Target:  5'- cGGUCgCCcucGCGCccgcgucGCGCUGCGCCAu -3'
miRNA:   3'- cUCAG-GGu--CGCGuc-----CGCGACGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 155899 0.66 0.587748
Target:  5'- cGGGg-CCGGCGCccGGGCuGCcGCGCCGa -3'
miRNA:   3'- -CUCagGGUCGCG--UCCG-CGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 30391 0.66 0.587748
Target:  5'- cGGGg-CCGGCGCccGGGCuGCcGCGCCGa -3'
miRNA:   3'- -CUCagGGUCGCG--UCCG-CGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 90287 0.66 0.587748
Target:  5'- ---cUgCAGCGCGGGCGacggGCGCCuGg -3'
miRNA:   3'- cucaGgGUCGCGUCCGCga--CGCGGuC- -5'
21585 3' -62.7 NC_004812.1 + 30512 0.66 0.587748
Target:  5'- aGGGgacgCCCGGgGcCGGGgGCcGCGCCGc -3'
miRNA:   3'- -CUCa---GGGUCgC-GUCCgCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 55255 0.66 0.586764
Target:  5'- uAGUa-CAGCGCgguguugGGGgGCUGgGCCAGg -3'
miRNA:   3'- cUCAggGUCGCG-------UCCgCGACgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 148280 0.66 0.577919
Target:  5'- ---gCCCGGCaGCGcGGCgGCgGCGCCGGc -3'
miRNA:   3'- cucaGGGUCG-CGU-CCG-CGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 141208 0.66 0.577919
Target:  5'- -cGUUCCGGCggGCGGGgGCgaguacGUGCCGGu -3'
miRNA:   3'- cuCAGGGUCG--CGUCCgCGa-----CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 107205 0.66 0.577919
Target:  5'- cGGGgCCaCGGCGCGGGCcGCcuggGCGUCGa -3'
miRNA:   3'- -CUCaGG-GUCGCGUCCG-CGa---CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 123770 0.66 0.577919
Target:  5'- -cGUCCCccCGaCGGGCGgaGCGCCc- -3'
miRNA:   3'- cuCAGGGucGC-GUCCGCgaCGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 27480 0.66 0.577919
Target:  5'- -cGcCCCGGCGCggaGGGCGCaGuCGCCc- -3'
miRNA:   3'- cuCaGGGUCGCG---UCCGCGaC-GCGGuc -5'
21585 3' -62.7 NC_004812.1 + 47047 0.66 0.577919
Target:  5'- gGGGUUUgcGUGCGGGCGUccUGCGUCAGc -3'
miRNA:   3'- -CUCAGGguCGCGUCCGCG--ACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 117379 0.66 0.577919
Target:  5'- ---gCCCGGCaGCGcGGCgGCgGCGCCGGc -3'
miRNA:   3'- cucaGGGUCG-CGU-CCG-CGaCGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.