Results 21 - 40 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21585 | 5' | -59.1 | NC_004812.1 | + | 72135 | 0.66 | 0.776667 |
Target: 5'- gGGUCGGGAgGGUg-CgGgGCCGGGGg -3' miRNA: 3'- -UCGGCCUUgUCAagGgUgUGGCCCCa -5' |
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21585 | 5' | -59.1 | NC_004812.1 | + | 6912 | 0.66 | 0.803405 |
Target: 5'- -cUCGGGGCGcgcuGcgCCCGCgggGCCGGGGUg -3' miRNA: 3'- ucGGCCUUGU----CaaGGGUG---UGGCCCCA- -5' |
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21585 | 5' | -59.1 | NC_004812.1 | + | 101608 | 0.66 | 0.779395 |
Target: 5'- uGGCCaGGGCGGaguggacggacucgUCCCACGcggagauCCGGGGg -3' miRNA: 3'- -UCGGcCUUGUCa-------------AGGGUGU-------GGCCCCa -5' |
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21585 | 5' | -59.1 | NC_004812.1 | + | 100868 | 0.66 | 0.785714 |
Target: 5'- cAGCuCGGcgAACAGggcgUCCCGgaACgCGGGGUg -3' miRNA: 3'- -UCG-GCC--UUGUCa---AGGGUg-UG-GCCCCA- -5' |
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21585 | 5' | -59.1 | NC_004812.1 | + | 99507 | 0.66 | 0.79463 |
Target: 5'- cGCCGuucuuGAACGGggUCCGCGCCaggagcuuGGGGa -3' miRNA: 3'- uCGGC-----CUUGUCaaGGGUGUGG--------CCCCa -5' |
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21585 | 5' | -59.1 | NC_004812.1 | + | 84849 | 0.66 | 0.767497 |
Target: 5'- cAGCCGGAcGCAGa--UCGCGCCGGcacGGUc -3' miRNA: 3'- -UCGGCCU-UGUCaagGGUGUGGCC---CCA- -5' |
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21585 | 5' | -59.1 | NC_004812.1 | + | 76690 | 0.66 | 0.800787 |
Target: 5'- cGCgGGaAACAGgUCCCGCAggaccuccgcgaagUUGGGGUg -3' miRNA: 3'- uCGgCC-UUGUCaAGGGUGU--------------GGCCCCA- -5' |
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21585 | 5' | -59.1 | NC_004812.1 | + | 45118 | 0.66 | 0.803405 |
Target: 5'- gAGUCGGGGCGaugUCCC-CAgaGGGGUc -3' miRNA: 3'- -UCGGCCUUGUca-AGGGuGUggCCCCA- -5' |
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21585 | 5' | -59.1 | NC_004812.1 | + | 36521 | 0.66 | 0.803405 |
Target: 5'- gGGCCGGAgGCGGcUCgggggCCGgGCCcGGGGUc -3' miRNA: 3'- -UCGGCCU-UGUCaAG-----GGUgUGG-CCCCA- -5' |
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21585 | 5' | -59.1 | NC_004812.1 | + | 10471 | 0.66 | 0.766573 |
Target: 5'- uGCCGGGugGGga-CCGCGggggggagucggcUCGGGGUa -3' miRNA: 3'- uCGGCCUugUCaagGGUGU-------------GGCCCCA- -5' |
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21585 | 5' | -59.1 | NC_004812.1 | + | 94138 | 0.67 | 0.720085 |
Target: 5'- cGuCUGGAcGCAGgcCgCCGCGCUGGGGUu -3' miRNA: 3'- uC-GGCCU-UGUCaaG-GGUGUGGCCCCA- -5' |
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21585 | 5' | -59.1 | NC_004812.1 | + | 8347 | 0.67 | 0.728784 |
Target: 5'- uGCCGGGcGCGGccgcCCCACcgcgucggcggccGCCGGGGc -3' miRNA: 3'- uCGGCCU-UGUCaa--GGGUG-------------UGGCCCCa -5' |
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21585 | 5' | -59.1 | NC_004812.1 | + | 70890 | 0.67 | 0.748817 |
Target: 5'- gGGCgGGGaggggGCGGggaUCUCGCGCgGGGGg -3' miRNA: 3'- -UCGgCCU-----UGUCa--AGGGUGUGgCCCCa -5' |
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21585 | 5' | -59.1 | NC_004812.1 | + | 123823 | 0.67 | 0.729746 |
Target: 5'- uGCCGcGGGCGGggCCCggGCGCCcGGGc -3' miRNA: 3'- uCGGC-CUUGUCaaGGG--UGUGGcCCCa -5' |
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21585 | 5' | -59.1 | NC_004812.1 | + | 71998 | 0.67 | 0.748817 |
Target: 5'- gGGCUGGGgcGCGGUcgUCUCGCGgucgcUCGGGGg -3' miRNA: 3'- -UCGGCCU--UGUCA--AGGGUGU-----GGCCCCa -5' |
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21585 | 5' | -59.1 | NC_004812.1 | + | 5930 | 0.67 | 0.729746 |
Target: 5'- -cCCGGGGCAGgccCCCGgGCacaGGGGg -3' miRNA: 3'- ucGGCCUUGUCaa-GGGUgUGg--CCCCa -5' |
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21585 | 5' | -59.1 | NC_004812.1 | + | 15958 | 0.67 | 0.729746 |
Target: 5'- cGGCCGGGcgACGGacgcCCCGCGgCCGGcGGc -3' miRNA: 3'- -UCGGCCU--UGUCaa--GGGUGU-GGCC-CCa -5' |
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21585 | 5' | -59.1 | NC_004812.1 | + | 40758 | 0.67 | 0.739327 |
Target: 5'- cGCgGGAGCcccgagcggGGUUCCCcugGCACCggacGGGGg -3' miRNA: 3'- uCGgCCUUG---------UCAAGGG---UGUGG----CCCCa -5' |
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21585 | 5' | -59.1 | NC_004812.1 | + | 129706 | 0.67 | 0.748817 |
Target: 5'- cGGCgGGAACGGcggggaCCGCggcggcgucggGCCGGGGg -3' miRNA: 3'- -UCGgCCUUGUCaag---GGUG-----------UGGCCCCa -5' |
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21585 | 5' | -59.1 | NC_004812.1 | + | 59602 | 0.67 | 0.739327 |
Target: 5'- gGGCgCGG-GCGGcgCUCGCgaACCGGGGg -3' miRNA: 3'- -UCG-GCCuUGUCaaGGGUG--UGGCCCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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