miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 5' -59.1 NC_004812.1 + 101608 0.66 0.779395
Target:  5'- uGGCCaGGGCGGaguggacggacucgUCCCACGcggagauCCGGGGg -3'
miRNA:   3'- -UCGGcCUUGUCa-------------AGGGUGU-------GGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 72135 0.66 0.776667
Target:  5'- gGGUCGGGAgGGUg-CgGgGCCGGGGg -3'
miRNA:   3'- -UCGGCCUUgUCAagGgUgUGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 82334 0.66 0.776667
Target:  5'- gAGCCGGAcccGCGGacggUgCGCgGCCGGGGc -3'
miRNA:   3'- -UCGGCCU---UGUCaa--GgGUG-UGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 17844 0.66 0.776667
Target:  5'- cGGCCGGGAUcgAGcgCCacagagGCACCGcGGGg -3'
miRNA:   3'- -UCGGCCUUG--UCaaGGg-----UGUGGC-CCCa -5'
21585 5' -59.1 NC_004812.1 + 23505 0.66 0.767497
Target:  5'- gGGCCGGGcgcgGCGGcgCCgGCuuuauGCCGGcGGUg -3'
miRNA:   3'- -UCGGCCU----UGUCaaGGgUG-----UGGCC-CCA- -5'
21585 5' -59.1 NC_004812.1 + 55148 0.66 0.767497
Target:  5'- gGGCCaGGAGCuGgccuggCaCCuCACCGGGGa -3'
miRNA:   3'- -UCGG-CCUUGuCaa----G-GGuGUGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 84849 0.66 0.767497
Target:  5'- cAGCCGGAcGCAGa--UCGCGCCGGcacGGUc -3'
miRNA:   3'- -UCGGCCU-UGUCaagGGUGUGGCC---CCA- -5'
21585 5' -59.1 NC_004812.1 + 149013 0.66 0.767497
Target:  5'- gGGCCGGGcgcgGCGGcgCCgGCuuuauGCCGGcGGUg -3'
miRNA:   3'- -UCGGCCU----UGUCaaGGgUG-----UGGCC-CCA- -5'
21585 5' -59.1 NC_004812.1 + 10471 0.66 0.766573
Target:  5'- uGCCGGGugGGga-CCGCGggggggagucggcUCGGGGUa -3'
miRNA:   3'- uCGGCCUugUCaagGGUGU-------------GGCCCCA- -5'
21585 5' -59.1 NC_004812.1 + 70988 0.66 0.763795
Target:  5'- gGGCCGGAACGccuccagacggCCCGCucgccGCCGcGGGg -3'
miRNA:   3'- -UCGGCCUUGUcaa--------GGGUG-----UGGC-CCCa -5'
21585 5' -59.1 NC_004812.1 + 104312 0.67 0.75821
Target:  5'- cGGCgGGGACGGcgCCU---CCGGGGg -3'
miRNA:   3'- -UCGgCCUUGUCaaGGGuguGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 35864 0.67 0.75821
Target:  5'- cAGCCGcGGuccuguGUUCUCugcGCGCCGGGGg -3'
miRNA:   3'- -UCGGC-CUugu---CAAGGG---UGUGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 77222 0.67 0.75821
Target:  5'- cAGCUGGcGCGG--CCgACGCgGGGGUg -3'
miRNA:   3'- -UCGGCCuUGUCaaGGgUGUGgCCCCA- -5'
21585 5' -59.1 NC_004812.1 + 106728 0.67 0.757276
Target:  5'- gGGUCGGcGGCGGggCCCAUcguccggGCgCGGGGg -3'
miRNA:   3'- -UCGGCC-UUGUCaaGGGUG-------UG-GCCCCa -5'
21585 5' -59.1 NC_004812.1 + 62741 0.67 0.748817
Target:  5'- -cCCGGAccCGGggaUCGCACCGGGGUc -3'
miRNA:   3'- ucGGCCUu-GUCaagGGUGUGGCCCCA- -5'
21585 5' -59.1 NC_004812.1 + 129706 0.67 0.748817
Target:  5'- cGGCgGGAACGGcggggaCCGCggcggcgucggGCCGGGGg -3'
miRNA:   3'- -UCGgCCUUGUCaag---GGUG-----------UGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 102448 0.67 0.748817
Target:  5'- cGCgGGcGCGGUacgugUCCCGcCGCCGGGa- -3'
miRNA:   3'- uCGgCCuUGUCA-----AGGGU-GUGGCCCca -5'
21585 5' -59.1 NC_004812.1 + 71998 0.67 0.748817
Target:  5'- gGGCUGGGgcGCGGUcgUCUCGCGgucgcUCGGGGg -3'
miRNA:   3'- -UCGGCCU--UGUCA--AGGGUGU-----GGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 70890 0.67 0.748817
Target:  5'- gGGCgGGGaggggGCGGggaUCUCGCGCgGGGGg -3'
miRNA:   3'- -UCGgCCU-----UGUCa--AGGGUGUGgCCCCa -5'
21585 5' -59.1 NC_004812.1 + 4633 0.67 0.748817
Target:  5'- gGGCgGGGggGCGGgacgCCCGCGC-GGGGa -3'
miRNA:   3'- -UCGgCCU--UGUCaa--GGGUGUGgCCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.