miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 3' -58.2 NC_004812.1 + 80946 0.65 0.846862
Target:  5'- cAGGCCgGCGGgggcuucaUCgacuaccacgagGCCGUCuCCCGCCUg -3'
miRNA:   3'- -UCUGG-CGCU--------AGa-----------UGGUAG-GGGCGGAg -5'
21591 3' -58.2 NC_004812.1 + 29214 0.66 0.842905
Target:  5'- -cGCCGCGGUgCUgcucggggaccacGCCGagcaggugagcacguUCCuCCGCCUCg -3'
miRNA:   3'- ucUGGCGCUA-GA-------------UGGU---------------AGG-GGCGGAG- -5'
21591 3' -58.2 NC_004812.1 + 83381 0.66 0.840508
Target:  5'- cGGCgGCGGUCcgcagGCCGg--CCGCCUCc -3'
miRNA:   3'- uCUGgCGCUAGa----UGGUaggGGCGGAG- -5'
21591 3' -58.2 NC_004812.1 + 63068 0.66 0.840508
Target:  5'- gGGACgGCacgCcGCCGcacccgcgCCCCGCCUCg -3'
miRNA:   3'- -UCUGgCGcuaGaUGGUa-------GGGGCGGAG- -5'
21591 3' -58.2 NC_004812.1 + 1575 0.66 0.840508
Target:  5'- -aGCCGCccgGGUCccccCCGcacggcUCCCCGCCUCc -3'
miRNA:   3'- ucUGGCG---CUAGau--GGU------AGGGGCGGAG- -5'
21591 3' -58.2 NC_004812.1 + 98179 0.66 0.840508
Target:  5'- -cACgGCGAUCcugGCCGggUCCCGCCg- -3'
miRNA:   3'- ucUGgCGCUAGa--UGGUa-GGGGCGGag -5'
21591 3' -58.2 NC_004812.1 + 7442 0.66 0.840508
Target:  5'- cGACCGgGGac-GCCGcCCCuCGCCUCc -3'
miRNA:   3'- uCUGGCgCUagaUGGUaGGG-GCGGAG- -5'
21591 3' -58.2 NC_004812.1 + 127083 0.66 0.840508
Target:  5'- -aGCCGCccgGGUCccccCCGcacggcUCCCCGCCUCc -3'
miRNA:   3'- ucUGGCG---CUAGau--GGU------AGGGGCGGAG- -5'
21591 3' -58.2 NC_004812.1 + 50941 0.66 0.840508
Target:  5'- cGGAacuCCGCGGcCgcCCGUCCCCucuggacgccaGCCUCc -3'
miRNA:   3'- -UCU---GGCGCUaGauGGUAGGGG-----------CGGAG- -5'
21591 3' -58.2 NC_004812.1 + 139149 0.66 0.840508
Target:  5'- -cGCCGCGGUCgagagcGCCAcCCCCaccGCCa- -3'
miRNA:   3'- ucUGGCGCUAGa-----UGGUaGGGG---CGGag -5'
21591 3' -58.2 NC_004812.1 + 132950 0.66 0.840508
Target:  5'- cGACCGgGGac-GCCGcCCCuCGCCUCc -3'
miRNA:   3'- uCUGGCgCUagaUGGUaGGG-GCGGAG- -5'
21591 3' -58.2 NC_004812.1 + 102093 0.66 0.833218
Target:  5'- cGGACCGCaGGUauccgacgaugcccgUGCCGccggCCCCGCCgUCg -3'
miRNA:   3'- -UCUGGCG-CUAg--------------AUGGUa---GGGGCGG-AG- -5'
21591 3' -58.2 NC_004812.1 + 110207 0.66 0.832399
Target:  5'- uGGCCauGCuGUCgGCCAUCCgCCGCgUCu -3'
miRNA:   3'- uCUGG--CGcUAGaUGGUAGG-GGCGgAG- -5'
21591 3' -58.2 NC_004812.1 + 118875 0.66 0.832399
Target:  5'- cGACCGCGAgggCcGCCG-CCCC-CCa- -3'
miRNA:   3'- uCUGGCGCUa--GaUGGUaGGGGcGGag -5'
21591 3' -58.2 NC_004812.1 + 85092 0.66 0.832399
Target:  5'- gAGGCCGcCGAg--GCCGUCCgcacccacgugaCCGCCa- -3'
miRNA:   3'- -UCUGGC-GCUagaUGGUAGG------------GGCGGag -5'
21591 3' -58.2 NC_004812.1 + 95284 0.66 0.832399
Target:  5'- uGGGCCGCGGUg-GCUcUCCaCCGCgUUg -3'
miRNA:   3'- -UCUGGCGCUAgaUGGuAGG-GGCGgAG- -5'
21591 3' -58.2 NC_004812.1 + 79258 0.66 0.832399
Target:  5'- uGGCCGCGGcagCggggagACCAcuuccauggCCCCGuCCUCg -3'
miRNA:   3'- uCUGGCGCUa--Ga-----UGGUa--------GGGGC-GGAG- -5'
21591 3' -58.2 NC_004812.1 + 130041 0.66 0.832399
Target:  5'- uGACgCGCGGguUCUgcaGCCAgCCCaugGCCUCg -3'
miRNA:   3'- uCUG-GCGCU--AGA---UGGUaGGGg--CGGAG- -5'
21591 3' -58.2 NC_004812.1 + 38701 0.66 0.832399
Target:  5'- uAGGCCGCGGgagaaGCCua-CCUGUCUCg -3'
miRNA:   3'- -UCUGGCGCUaga--UGGuagGGGCGGAG- -5'
21591 3' -58.2 NC_004812.1 + 65106 0.66 0.832399
Target:  5'- cGGCCGcCGGcUCggccGCCAagCCCGcCCUCa -3'
miRNA:   3'- uCUGGC-GCU-AGa---UGGUagGGGC-GGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.