miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 3' -58.2 NC_004812.1 + 118117 0.7 0.593743
Target:  5'- cGACCcCGGgccuCCGUCCCCGCCa- -3'
miRNA:   3'- uCUGGcGCUagauGGUAGGGGCGGag -5'
21591 3' -58.2 NC_004812.1 + 131141 0.72 0.485558
Target:  5'- gGGGCCGCGGcauggucUCUuCC-UCCCCGCgUCc -3'
miRNA:   3'- -UCUGGCGCU-------AGAuGGuAGGGGCGgAG- -5'
21591 3' -58.2 NC_004812.1 + 19108 0.72 0.486495
Target:  5'- cGGCCGCGG---GCCAggcCCCCGCCa- -3'
miRNA:   3'- uCUGGCGCUagaUGGUa--GGGGCGGag -5'
21591 3' -58.2 NC_004812.1 + 33957 0.72 0.486495
Target:  5'- gGGGCCGgGGUC-GCgGUCCCCGagcuCCUCu -3'
miRNA:   3'- -UCUGGCgCUAGaUGgUAGGGGC----GGAG- -5'
21591 3' -58.2 NC_004812.1 + 1066 0.71 0.514978
Target:  5'- cGGCCGCGGUCU-CCuccugCCCgGCCg- -3'
miRNA:   3'- uCUGGCGCUAGAuGGua---GGGgCGGag -5'
21591 3' -58.2 NC_004812.1 + 15743 0.71 0.534336
Target:  5'- gGGGCCGCGGgg-GCCG-CCCgCGCCgUCa -3'
miRNA:   3'- -UCUGGCGCUagaUGGUaGGG-GCGG-AG- -5'
21591 3' -58.2 NC_004812.1 + 86356 0.71 0.544113
Target:  5'- -cACCGCGAUCcGCCAcCCCCGgCg- -3'
miRNA:   3'- ucUGGCGCUAGaUGGUaGGGGCgGag -5'
21591 3' -58.2 NC_004812.1 + 27908 0.7 0.583737
Target:  5'- -aGCC-CGGUCggggagACCGggcgCCCCGCCUCc -3'
miRNA:   3'- ucUGGcGCUAGa-----UGGUa---GGGGCGGAG- -5'
21591 3' -58.2 NC_004812.1 + 151464 0.7 0.583737
Target:  5'- cGGACCGCGGgccgacgCcGCCGUCCCCgggcgGCCcCg -3'
miRNA:   3'- -UCUGGCGCUa------GaUGGUAGGGG-----CGGaG- -5'
21591 3' -58.2 NC_004812.1 + 55422 0.73 0.449731
Target:  5'- cGGCgcggCGCGGUUguccacgACCGUCCCCGCCg- -3'
miRNA:   3'- uCUG----GCGCUAGa------UGGUAGGGGCGGag -5'
21591 3' -58.2 NC_004812.1 + 131018 0.73 0.431932
Target:  5'- cGGCCGCGGggaaGgCGUCCCCGCCg- -3'
miRNA:   3'- uCUGGCGCUaga-UgGUAGGGGCGGag -5'
21591 3' -58.2 NC_004812.1 + 77171 0.74 0.397606
Target:  5'- cGcCCGCGG-CggcGCCGUCCCCGCCg- -3'
miRNA:   3'- uCuGGCGCUaGa--UGGUAGGGGCGGag -5'
21591 3' -58.2 NC_004812.1 + 15484 0.8 0.181082
Target:  5'- cGACCGCGugugccucuUCUACCAcCCCCGCCg- -3'
miRNA:   3'- uCUGGCGCu--------AGAUGGUaGGGGCGGag -5'
21591 3' -58.2 NC_004812.1 + 103766 0.79 0.199802
Target:  5'- gGGGCCGCGGUCgggcgugugGCCGUCCCCcagGCCa- -3'
miRNA:   3'- -UCUGGCGCUAGa--------UGGUAGGGG---CGGag -5'
21591 3' -58.2 NC_004812.1 + 30768 0.78 0.220184
Target:  5'- gGGGCCGCGggCgaGCCggCCCCGCCUg -3'
miRNA:   3'- -UCUGGCGCuaGa-UGGuaGGGGCGGAg -5'
21591 3' -58.2 NC_004812.1 + 152412 0.78 0.22555
Target:  5'- -cGCCGCGGUCcccGCCGUUCCCGCCg- -3'
miRNA:   3'- ucUGGCGCUAGa--UGGUAGGGGCGGag -5'
21591 3' -58.2 NC_004812.1 + 15927 0.76 0.278942
Target:  5'- cGGCCGCGGUCgacCCcgCCCUGCCg- -3'
miRNA:   3'- uCUGGCGCUAGau-GGuaGGGGCGGag -5'
21591 3' -58.2 NC_004812.1 + 93547 0.76 0.312726
Target:  5'- gGGGCCGUGGgggCggaGCCAgacgcCCCCGCCUCc -3'
miRNA:   3'- -UCUGGCGCUa--Ga--UGGUa----GGGGCGGAG- -5'
21591 3' -58.2 NC_004812.1 + 55732 0.75 0.349524
Target:  5'- gGGGCCGCGGc--GCCcucCCCCGCCUCc -3'
miRNA:   3'- -UCUGGCGCUagaUGGua-GGGGCGGAG- -5'
21591 3' -58.2 NC_004812.1 + 67346 0.74 0.373039
Target:  5'- -cGCCGCGGcCUGCgCGUCCCaCGCCUg -3'
miRNA:   3'- ucUGGCGCUaGAUG-GUAGGG-GCGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.