miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 5' -51.2 NC_004812.1 + 128740 0.66 0.993777
Target:  5'- gGCGGccGAAGGCgcggccGGAgccgGGCUCGGGCGg -3'
miRNA:   3'- -CGCUcuCUUUUG------UCUa---UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 19889 0.66 0.993777
Target:  5'- cGCGGGGGggGucguggguGCuGggGGCCggaaAGGCGa -3'
miRNA:   3'- -CGCUCUCuuU--------UGuCuaUCGGg---UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 156012 0.66 0.993777
Target:  5'- cGCGGGGGAGG--GGAc-GCCCGGGg- -3'
miRNA:   3'- -CGCUCUCUUUugUCUauCGGGUCCgc -5'
21591 5' -51.2 NC_004812.1 + 45802 0.66 0.993777
Target:  5'- gGC-AGAGAcAACAGAc-GCCCGGGa- -3'
miRNA:   3'- -CGcUCUCUuUUGUCUauCGGGUCCgc -5'
21591 5' -51.2 NC_004812.1 + 32643 0.66 0.993777
Target:  5'- aGCGAGAc-GAACAGccccCCCGGGCu -3'
miRNA:   3'- -CGCUCUcuUUUGUCuaucGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 30504 0.66 0.993777
Target:  5'- cGCGGGGGAGG--GGAc-GCCCGGGg- -3'
miRNA:   3'- -CGCUCUCUUUugUCUauCGGGUCCgc -5'
21591 5' -51.2 NC_004812.1 + 80631 0.66 0.993777
Target:  5'- cGCGguGGAGAgGGGCGGggAGUCCGGcaGCGg -3'
miRNA:   3'- -CGC--UCUCU-UUUGUCuaUCGGGUC--CGC- -5'
21591 5' -51.2 NC_004812.1 + 19680 0.66 0.992915
Target:  5'- cGCGGGGacGAGGGCGGcccggucggccucgGGCCCAacGGCGu -3'
miRNA:   3'- -CGCUCU--CUUUUGUCua------------UCGGGU--CCGC- -5'
21591 5' -51.2 NC_004812.1 + 100470 0.66 0.992814
Target:  5'- gGCGuAGAGggGcGCGGcc-GCCCGGaGCGc -3'
miRNA:   3'- -CGC-UCUCuuU-UGUCuauCGGGUC-CGC- -5'
21591 5' -51.2 NC_004812.1 + 72650 0.66 0.992814
Target:  5'- cGCGA-AGAAGgggucucccuccGCGGcgAGCCC-GGCGa -3'
miRNA:   3'- -CGCUcUCUUU------------UGUCuaUCGGGuCCGC- -5'
21591 5' -51.2 NC_004812.1 + 71043 0.66 0.992814
Target:  5'- cGCuGGGGAGGGCGGcc-GCCCcugcGGCGg -3'
miRNA:   3'- -CGcUCUCUUUUGUCuauCGGGu---CCGC- -5'
21591 5' -51.2 NC_004812.1 + 146990 0.66 0.992814
Target:  5'- gGCGAGGGAcuGCGGcugcgGGCUCgcuucaucguuGGGCGc -3'
miRNA:   3'- -CGCUCUCUuuUGUCua---UCGGG-----------UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 52487 0.66 0.992814
Target:  5'- -gGAGAGGAAGgAGGacacGCCCGagacGGCGg -3'
miRNA:   3'- cgCUCUCUUUUgUCUau--CGGGU----CCGC- -5'
21591 5' -51.2 NC_004812.1 + 44443 0.66 0.992814
Target:  5'- aCGAGgucGGAGAgGCGGAgcauGCCgCGGGCGc -3'
miRNA:   3'- cGCUC---UCUUU-UGUCUau--CGG-GUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 96337 0.66 0.992814
Target:  5'- gGCGGGGccGGAA--AGGcGGCCCAGGgGg -3'
miRNA:   3'- -CGCUCU--CUUUugUCUaUCGGGUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 130487 0.66 0.992814
Target:  5'- gGCGAGgcGGggGGCGacgGGUCCGGGUc -3'
miRNA:   3'- -CGCUC--UCuuUUGUcuaUCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 12852 0.66 0.992814
Target:  5'- cGCGGGAGGAAccGCGGGgaagaaccGCCgCGacGGCGg -3'
miRNA:   3'- -CGCUCUCUUU--UGUCUau------CGG-GU--CCGC- -5'
21591 5' -51.2 NC_004812.1 + 113260 0.66 0.992814
Target:  5'- aGCGAGAGcuucgcccGCAGc--GCCguGGCGa -3'
miRNA:   3'- -CGCUCUCuuu-----UGUCuauCGGguCCGC- -5'
21591 5' -51.2 NC_004812.1 + 39352 0.66 0.991736
Target:  5'- cGCcGGAGcgcuCGGcgGGCCCGGGUa -3'
miRNA:   3'- -CGcUCUCuuuuGUCuaUCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 150846 0.66 0.991736
Target:  5'- aGCGgacGGGGAGAGgAGAggGGCCgGaGGCGc -3'
miRNA:   3'- -CGC---UCUCUUUUgUCUa-UCGGgU-CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.