miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 5' -51.2 NC_004812.1 + 110735 0.66 0.989198
Target:  5'- gGCGGGAGAcccucGCGGA-GGUCUugGGGCGu -3'
miRNA:   3'- -CGCUCUCUuu---UGUCUaUCGGG--UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 45085 0.66 0.990534
Target:  5'- cCGGGGGAAAGCc---GGCCggCGGGCGg -3'
miRNA:   3'- cGCUCUCUUUUGucuaUCGG--GUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 62420 0.66 0.99127
Target:  5'- uGCGGGGGGGAggagcGCGauguccuggacuuuGGccaagacgccuucUGGCCCAGGCGc -3'
miRNA:   3'- -CGCUCUCUUU-----UGU--------------CU-------------AUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 56411 0.66 0.98772
Target:  5'- gGUGAcGuGAuuGCAGAUgcgguccgccaGGCgCCGGGCGa -3'
miRNA:   3'- -CGCU-CuCUuuUGUCUA-----------UCG-GGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 31834 0.66 0.989749
Target:  5'- cGCGGGAccagcGAGAccgagcgccggcuccACAGccAGCCgGGGCGg -3'
miRNA:   3'- -CGCUCU-----CUUU---------------UGUCuaUCGGgUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 54724 0.66 0.98772
Target:  5'- gGgGAGGGGAGGgGGAggGGgCCGGcGCGg -3'
miRNA:   3'- -CgCUCUCUUUUgUCUa-UCgGGUC-CGC- -5'
21591 5' -51.2 NC_004812.1 + 73232 0.66 0.98772
Target:  5'- uGCGGGuc-GGGCGGGcGGCCCgcccccAGGCGg -3'
miRNA:   3'- -CGCUCucuUUUGUCUaUCGGG------UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 78626 0.66 0.989198
Target:  5'- gGCGGGgggcuguucguuGGAAGACGG--GGCCgGGGCc -3'
miRNA:   3'- -CGCUC------------UCUUUUGUCuaUCGGgUCCGc -5'
21591 5' -51.2 NC_004812.1 + 145603 0.66 0.990534
Target:  5'- cCGGGGcGAAGGCGGAcccgUGGUCCgccgGGGCGc -3'
miRNA:   3'- cGCUCU-CUUUUGUCU----AUCGGG----UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 112895 0.66 0.98772
Target:  5'- gGCGAGAcGAcggcGACGGAgcGCCCucgccgcgaAGGCa -3'
miRNA:   3'- -CGCUCU-CUu---UUGUCUauCGGG---------UCCGc -5'
21591 5' -51.2 NC_004812.1 + 107969 0.66 0.98772
Target:  5'- cGCGGGAucGGAUAGAgAGgCgGGGCGu -3'
miRNA:   3'- -CGCUCUcuUUUGUCUaUCgGgUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 127569 0.66 0.990908
Target:  5'- cGCGGGGGAGGgggcgcgccccccGCgucuaccaguccucgGGGcGGCCCGGGCc -3'
miRNA:   3'- -CGCUCUCUUU-------------UG---------------UCUaUCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 80050 0.66 0.98772
Target:  5'- cGCGGGGGGucGCuGccGGCCgAGGCc -3'
miRNA:   3'- -CGCUCUCUuuUGuCuaUCGGgUCCGc -5'
21591 5' -51.2 NC_004812.1 + 134277 0.66 0.990534
Target:  5'- cCGAGucuaGGGGAAcCAGGUccAGCCCcGGCGc -3'
miRNA:   3'- cGCUC----UCUUUU-GUCUA--UCGGGuCCGC- -5'
21591 5' -51.2 NC_004812.1 + 150846 0.66 0.991736
Target:  5'- aGCGgacGGGGAGAGgAGAggGGCCgGaGGCGc -3'
miRNA:   3'- -CGC---UCUCUUUUgUCUa-UCGGgU-CCGC- -5'
21591 5' -51.2 NC_004812.1 + 109449 0.66 0.989057
Target:  5'- cCGAGGGAGAgggcggcGCGGGggcGCCCgcGGGCu -3'
miRNA:   3'- cGCUCUCUUU-------UGUCUau-CGGG--UCCGc -5'
21591 5' -51.2 NC_004812.1 + 152509 0.66 0.98772
Target:  5'- gGCGccGGGGAGGACGGccccGCCgGGGCc -3'
miRNA:   3'- -CGC--UCUCUUUUGUCuau-CGGgUCCGc -5'
21591 5' -51.2 NC_004812.1 + 121811 0.66 0.98772
Target:  5'- gGCGGGGGcggccucgGAGGCGGA--GgCCGGGCGc -3'
miRNA:   3'- -CGCUCUC--------UUUUGUCUauCgGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 46293 0.66 0.98772
Target:  5'- gGCGgccGGAGGccGCGGcgGGCCgcgCGGGCGa -3'
miRNA:   3'- -CGC---UCUCUuuUGUCuaUCGG---GUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 30504 0.66 0.993777
Target:  5'- cGCGGGGGAGG--GGAc-GCCCGGGg- -3'
miRNA:   3'- -CGCUCUCUUUugUCUauCGGGUCCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.