miRNA display CGI


Results 61 - 80 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 5' -51.2 NC_004812.1 + 2977 0.66 0.989198
Target:  5'- aGCGccGAGAcgucGGGCGGccgGUccaguugccGGCCCAGGCGg -3'
miRNA:   3'- -CGCu-CUCU----UUUGUC---UA---------UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 154718 0.67 0.980202
Target:  5'- aCGGGGugccGCGGGcggGGCCCGGGCGc -3'
miRNA:   3'- cGCUCUcuuuUGUCUa--UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 68575 0.67 0.982341
Target:  5'- aGCGGGAcaGGGACAGGccGGCCCuccGGGUGa -3'
miRNA:   3'- -CGCUCUc-UUUUGUCUa-UCGGG---UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 132972 0.67 0.977876
Target:  5'- gGCGAGGGucacGCGGAc-GCCCgucuGGGCGc -3'
miRNA:   3'- -CGCUCUCuuu-UGUCUauCGGG----UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 91353 0.67 0.982135
Target:  5'- cGUGAGGuGGGGCAGAcgcuuguUGGCgUAGGCGc -3'
miRNA:   3'- -CGCUCUcUUUUGUCU-------AUCGgGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 114986 0.67 0.982341
Target:  5'- gGCGuAGAGAAAACAacguuuaauGUAGaaaagacacCCCGGGCGg -3'
miRNA:   3'- -CGC-UCUCUUUUGUc--------UAUC---------GGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 147806 0.67 0.980202
Target:  5'- cCGAGAG--------UAGCCCGGGCGg -3'
miRNA:   3'- cGCUCUCuuuugucuAUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 1855 0.67 0.977876
Target:  5'- aUGAGAGcccgcCGGGggccuccauUGGCCCGGGCGc -3'
miRNA:   3'- cGCUCUCuuuu-GUCU---------AUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 9744 0.67 0.984301
Target:  5'- cCGGGAGggGACcgccaccaGGCCCGcGGCGc -3'
miRNA:   3'- cGCUCUCuuUUGucua----UCGGGU-CCGC- -5'
21591 5' -51.2 NC_004812.1 + 101016 0.67 0.984301
Target:  5'- gGCGcGAGgcAGCGGAUcGCCUcgGGGUGc -3'
miRNA:   3'- -CGCuCUCuuUUGUCUAuCGGG--UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 102390 0.67 0.984301
Target:  5'- -gGAGGGGGgcacGACGGAagcGCCCgcGGGCGg -3'
miRNA:   3'- cgCUCUCUU----UUGUCUau-CGGG--UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 38643 0.67 0.986091
Target:  5'- aGCGGGGGGuuGAACAGc---CCCAGGgGc -3'
miRNA:   3'- -CGCUCUCU--UUUGUCuaucGGGUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 136894 0.67 0.986091
Target:  5'- -gGAGGGGGgcGACGGGUacgccguugGGCCCgAGGCc -3'
miRNA:   3'- cgCUCUCUU--UUGUCUA---------UCGGG-UCCGc -5'
21591 5' -51.2 NC_004812.1 + 155286 0.67 0.986091
Target:  5'- -gGGGAGggGcggggcGCGGcggGGCCCGGGgGu -3'
miRNA:   3'- cgCUCUCuuU------UGUCua-UCGGGUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 6443 0.67 0.977876
Target:  5'- gGCGGGGGGAccgccgggacGACcGcgGGCCCGGGg- -3'
miRNA:   3'- -CGCUCUCUU----------UUGuCuaUCGGGUCCgc -5'
21591 5' -51.2 NC_004812.1 + 125714 0.67 0.986091
Target:  5'- cCGGGGGAGGGCccGGGUcgcgcAGCCCcGGCc -3'
miRNA:   3'- cGCUCUCUUUUG--UCUA-----UCGGGuCCGc -5'
21591 5' -51.2 NC_004812.1 + 109396 0.67 0.977633
Target:  5'- gGCG-GAGcgGcuguuggucccccACGGGUGGCCC-GGCGg -3'
miRNA:   3'- -CGCuCUCuuU-------------UGUCUAUCGGGuCCGC- -5'
21591 5' -51.2 NC_004812.1 + 139335 0.67 0.981718
Target:  5'- cCGAGAuuuucacGAAGGCGGAggcggucgcgugGGCCCGGGgGc -3'
miRNA:   3'- cGCUCU-------CUUUUGUCUa-----------UCGGGUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 80057 0.67 0.982135
Target:  5'- cCGAGAGcacggucGAGGCGGccguccgGGCCCAGGgCGu -3'
miRNA:   3'- cGCUCUC-------UUUUGUCua-----UCGGGUCC-GC- -5'
21591 5' -51.2 NC_004812.1 + 118536 0.67 0.986091
Target:  5'- gGCGAGAGggGACAcGU--CCCAGaCGa -3'
miRNA:   3'- -CGCUCUCuuUUGUcUAucGGGUCcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.