miRNA display CGI


Results 81 - 100 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 5' -51.2 NC_004812.1 + 36263 0.67 0.982341
Target:  5'- cGCGGGuugcaGGGGCGGcgaaaGUAGUCCAGGCu -3'
miRNA:   3'- -CGCUCuc---UUUUGUC-----UAUCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 77960 0.67 0.980202
Target:  5'- gGCGGGGGcGAAgAGGguGUCCGGGCc -3'
miRNA:   3'- -CGCUCUCuUUUgUCUauCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 116905 0.67 0.980202
Target:  5'- cCGAGAG--------UAGCCCGGGCGg -3'
miRNA:   3'- cGCUCUCuuuugucuAUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 123817 0.67 0.980202
Target:  5'- aCGGGGugccGCGGGcggGGCCCGGGCGc -3'
miRNA:   3'- cGCUCUcuuuUGUCUa--UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 16768 0.67 0.977876
Target:  5'- cGCGGGcccGAAGACgcgugGGGcGGCCgAGGCGa -3'
miRNA:   3'- -CGCUCu--CUUUUG-----UCUaUCGGgUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 1855 0.67 0.977876
Target:  5'- aUGAGAGcccgcCGGGggccuccauUGGCCCGGGCGc -3'
miRNA:   3'- cGCUCUCuuuu-GUCU---------AUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 6443 0.67 0.977876
Target:  5'- gGCGGGGGGAccgccgggacGACcGcgGGCCCGGGg- -3'
miRNA:   3'- -CGCUCUCUU----------UUGuCuaUCGGGUCCgc -5'
21591 5' -51.2 NC_004812.1 + 110118 0.67 0.97714
Target:  5'- cGCGGGAGAAAACGcGUGGgaggacgacgacgaCCCGGacGCGg -3'
miRNA:   3'- -CGCUCUCUUUUGUcUAUC--------------GGGUC--CGC- -5'
21591 5' -51.2 NC_004812.1 + 147806 0.67 0.980202
Target:  5'- cCGAGAG--------UAGCCCGGGCGg -3'
miRNA:   3'- cGCUCUCuuuugucuAUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 104673 0.67 0.982341
Target:  5'- uGCGGGGGuGGGACAGGUcccacagcugGGCCgccgccaugCGGGCGu -3'
miRNA:   3'- -CGCUCUC-UUUUGUCUA----------UCGG---------GUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 106568 0.67 0.984301
Target:  5'- -aGGGAGGAGGCGcccGGgCCGGGCGc -3'
miRNA:   3'- cgCUCUCUUUUGUcuaUCgGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 132972 0.67 0.977876
Target:  5'- gGCGAGGGucacGCGGAc-GCCCgucuGGGCGc -3'
miRNA:   3'- -CGCUCUCuuu-UGUCUauCGGG----UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 62924 0.67 0.986091
Target:  5'- cCGGGGGAcgGCGG-UGGCgaGGGCGa -3'
miRNA:   3'- cGCUCUCUuuUGUCuAUCGggUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 142043 0.67 0.980202
Target:  5'- aCGAGGacGAGCAGGc--CCCGGGCGa -3'
miRNA:   3'- cGCUCUcuUUUGUCUaucGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 102390 0.67 0.984301
Target:  5'- -gGAGGGGGgcacGACGGAagcGCCCgcGGGCGg -3'
miRNA:   3'- cgCUCUCUU----UUGUCUau-CGGG--UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 101016 0.67 0.984301
Target:  5'- gGCGcGAGgcAGCGGAUcGCCUcgGGGUGc -3'
miRNA:   3'- -CGCuCUCuuUUGUCUAuCGGG--UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 9744 0.67 0.984301
Target:  5'- cCGGGAGggGACcgccaccaGGCCCGcGGCGc -3'
miRNA:   3'- cGCUCUCuuUUGucua----UCGGGU-CCGC- -5'
21591 5' -51.2 NC_004812.1 + 5356 0.67 0.984301
Target:  5'- cCGGGAGAGgcGGCAGAcucgGGCUCucccgcGGCGg -3'
miRNA:   3'- cGCUCUCUU--UUGUCUa---UCGGGu-----CCGC- -5'
21591 5' -51.2 NC_004812.1 + 40000 0.67 0.984301
Target:  5'- gGCGAGcGGccgcGACAGAcgcggcGGCCCGcGGCGg -3'
miRNA:   3'- -CGCUCuCUu---UUGUCUa-----UCGGGU-CCGC- -5'
21591 5' -51.2 NC_004812.1 + 6340 0.67 0.984301
Target:  5'- -gGAGGGgcAGCAGggGGCggCAGGCGc -3'
miRNA:   3'- cgCUCUCuuUUGUCuaUCGg-GUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.