miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 5' -51.2 NC_004812.1 + 25994 1.13 0.004709
Target:  5'- cGCGAGAGAAAACAGAUAGCCCAGGCGg -3'
miRNA:   3'- -CGCUCUCUUUUGUCUAUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 37047 0.84 0.296102
Target:  5'- gGCGAGGGGAAGgGGGUcgggGGCCUGGGCGg -3'
miRNA:   3'- -CGCUCUCUUUUgUCUA----UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 6146 0.84 0.296102
Target:  5'- gGCGAGGGGAAGgGGGUcgggGGCCUGGGCGg -3'
miRNA:   3'- -CGCUCUCUUUUgUCUA----UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 17941 0.82 0.365379
Target:  5'- gGgGGGGGAGAGgGGGUcGCCCGGGCGa -3'
miRNA:   3'- -CgCUCUCUUUUgUCUAuCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 125171 0.79 0.49332
Target:  5'- gGCGGGAG---GCGGGagGGCCCGGGCGc -3'
miRNA:   3'- -CGCUCUCuuuUGUCUa-UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 156072 0.79 0.49332
Target:  5'- gGCGGGAG---GCGGGagGGCCCGGGCGc -3'
miRNA:   3'- -CGCUCUCuuuUGUCUa-UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 61893 0.78 0.533581
Target:  5'- gGCGAGGGGGAucCAGAUGuGCUCGGGCc -3'
miRNA:   3'- -CGCUCUCUUUu-GUCUAU-CGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 16770 0.78 0.543835
Target:  5'- cGCGGGGGccgGAGGguGAgggGGCCCAGGUGg -3'
miRNA:   3'- -CGCUCUC---UUUUguCUa--UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 152617 0.77 0.606455
Target:  5'- aGCGGcGGcGAGAGCAGGU-GCCCGGGCc -3'
miRNA:   3'- -CGCU-CU-CUUUUGUCUAuCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 121716 0.77 0.606455
Target:  5'- aGCGGcGGcGAGAGCAGGU-GCCCGGGCc -3'
miRNA:   3'- -CGCU-CU-CUUUUGUCUAuCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 38568 0.77 0.606455
Target:  5'- cGCGGGGGGAAgauccGCGGGUccgccuGGCCCGGcGCGg -3'
miRNA:   3'- -CGCUCUCUUU-----UGUCUA------UCGGGUC-CGC- -5'
21591 5' -51.2 NC_004812.1 + 71885 0.77 0.627572
Target:  5'- gGUGAGAGAGccGACGGcgGG-CCGGGCGg -3'
miRNA:   3'- -CGCUCUCUU--UUGUCuaUCgGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 108546 0.76 0.638141
Target:  5'- uCGGGGGGAAACucggggguGAUgaaGGCCCGGGCGu -3'
miRNA:   3'- cGCUCUCUUUUGu-------CUA---UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 153459 0.76 0.648704
Target:  5'- cGCGGGGGggGGCGGAggggAGCgC-GGCGg -3'
miRNA:   3'- -CGCUCUCuuUUGUCUa---UCGgGuCCGC- -5'
21591 5' -51.2 NC_004812.1 + 122558 0.76 0.648704
Target:  5'- cGCGGGGGggGGCGGAggggAGCgC-GGCGg -3'
miRNA:   3'- -CGCUCUCuuUUGUCUa---UCGgGuCCGC- -5'
21591 5' -51.2 NC_004812.1 + 48118 0.76 0.648704
Target:  5'- cGCGGGAGAcggcggagGAGCGGGUGGCCguccucgAGGCGc -3'
miRNA:   3'- -CGCUCUCU--------UUUGUCUAUCGGg------UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 32676 0.76 0.659254
Target:  5'- cGCGGGAGGAGGCcGGgccGGCCCGGGa- -3'
miRNA:   3'- -CGCUCUCUUUUGuCUa--UCGGGUCCgc -5'
21591 5' -51.2 NC_004812.1 + 93290 0.76 0.680274
Target:  5'- aGCGAGA-AGAGCAgGAUGuGCuCCAGGCGg -3'
miRNA:   3'- -CGCUCUcUUUUGU-CUAU-CG-GGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 59648 0.76 0.680274
Target:  5'- cGCGGGGGAugAGACGGAcgGGCCggcgCGGGCGc -3'
miRNA:   3'- -CGCUCUCU--UUUGUCUa-UCGG----GUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 77472 0.76 0.680274
Target:  5'- gGCGAGcGGAGGCGGGgcugGGaCCCGGGCc -3'
miRNA:   3'- -CGCUCuCUUUUGUCUa---UC-GGGUCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.