miRNA display CGI


Results 21 - 40 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 5' -51.2 NC_004812.1 + 56869 0.75 0.701125
Target:  5'- cCGAGAGggGgguCAGAacGCCCGGGCc -3'
miRNA:   3'- cGCUCUCuuUu--GUCUauCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 59697 0.75 0.721728
Target:  5'- cGCGAGGGAGAGCGGcggcgAGCggCgAGGCGg -3'
miRNA:   3'- -CGCUCUCUUUUGUCua---UCG--GgUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 100879 0.74 0.742003
Target:  5'- gGCGGGGGAGGGCGccgcGGCCCccgAGGCGg -3'
miRNA:   3'- -CGCUCUCUUUUGUcua-UCGGG---UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 20125 0.74 0.742003
Target:  5'- cGCGcGGGGGAGCGGAccgGGCCCcGGCc -3'
miRNA:   3'- -CGCuCUCUUUUGUCUa--UCGGGuCCGc -5'
21591 5' -51.2 NC_004812.1 + 44531 0.74 0.751992
Target:  5'- -aGaAGAGggGugGGcGUGGCCCGGGCu -3'
miRNA:   3'- cgC-UCUCuuUugUC-UAUCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 5730 0.74 0.761868
Target:  5'- cGCGGGAGGAGGgcgcCGGGcgccGCCCAGGCc -3'
miRNA:   3'- -CGCUCUCUUUU----GUCUau--CGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 155881 0.74 0.761868
Target:  5'- gGCGGGGGAGgggaggGGCGGGgccggcGCCCGGGCu -3'
miRNA:   3'- -CGCUCUCUU------UUGUCUau----CGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 30373 0.74 0.761868
Target:  5'- gGCGGGGGAGgggaggGGCGGGgccggcGCCCGGGCu -3'
miRNA:   3'- -CGCUCUCUU------UUGUCUau----CGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 36631 0.74 0.761868
Target:  5'- cGCGGGAGGAGGgcgcCGGGcgccGCCCAGGCc -3'
miRNA:   3'- -CGCUCUCUUUU----GUCUau--CGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 155445 0.74 0.771622
Target:  5'- gGCGAcGAGGGAGCGGggGGC-CGGGCu -3'
miRNA:   3'- -CGCU-CUCUUUUGUCuaUCGgGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 148989 0.74 0.771622
Target:  5'- gGCGAGGGAAGgaggguguGCGGcgGGCCgGGcGCGg -3'
miRNA:   3'- -CGCUCUCUUU--------UGUCuaUCGGgUC-CGC- -5'
21591 5' -51.2 NC_004812.1 + 23481 0.74 0.771622
Target:  5'- gGCGAGGGAAGgaggguguGCGGcgGGCCgGGcGCGg -3'
miRNA:   3'- -CGCUCUCUUU--------UGUCuaUCGGgUC-CGC- -5'
21591 5' -51.2 NC_004812.1 + 20339 0.74 0.771622
Target:  5'- uCGAGuGcAGGGCGGGcacgGGCCCGGGCGu -3'
miRNA:   3'- cGCUCuC-UUUUGUCUa---UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 32830 0.74 0.781243
Target:  5'- aCGAGuGggGGCGGGgggcGGCCCccaGGGCGg -3'
miRNA:   3'- cGCUCuCuuUUGUCUa---UCGGG---UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 16083 0.73 0.827018
Target:  5'- aCGGGAGGAAACGGGccuggAGUCuCGGGCa -3'
miRNA:   3'- cGCUCUCUUUUGUCUa----UCGG-GUCCGc -5'
21591 5' -51.2 NC_004812.1 + 32896 0.73 0.835642
Target:  5'- cCGAGAugauGAGGuggauCAGcgAGCCCGGGCGu -3'
miRNA:   3'- cGCUCU----CUUUu----GUCuaUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 107802 0.72 0.844068
Target:  5'- aGCGuGAuGggGGCGGGUAGCa-GGGCGu -3'
miRNA:   3'- -CGCuCU-CuuUUGUCUAUCGggUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 65980 0.72 0.844068
Target:  5'- cGUGGGccacGAAGCGG-UAGCCCGGGCa -3'
miRNA:   3'- -CGCUCuc--UUUUGUCuAUCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 111022 0.72 0.844068
Target:  5'- aGCGGGAGcacuACuGGGUcGCCCAGGCc -3'
miRNA:   3'- -CGCUCUCuuu-UG-UCUAuCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 30802 0.72 0.849845
Target:  5'- cGCGGGccgagggccccacgGGggGGCAGGgcGGCgCCAGGCGc -3'
miRNA:   3'- -CGCUC--------------UCuuUUGUCUa-UCG-GGUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.