miRNA display CGI


Results 61 - 80 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 5' -51.2 NC_004812.1 + 139045 0.72 0.875649
Target:  5'- aCGAcgGAGggGACGGAggcgAGCCCAG-CGu -3'
miRNA:   3'- cGCU--CUCuuUUGUCUa---UCGGGUCcGC- -5'
21591 5' -51.2 NC_004812.1 + 14555 0.72 0.875649
Target:  5'- cGCGaAGGGAAAcucccGCAGGggcaGGCCCgcGGGCGu -3'
miRNA:   3'- -CGC-UCUCUUU-----UGUCUa---UCGGG--UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 88097 0.71 0.882979
Target:  5'- -gGAG-GAGAACGGGUucGgCCAGGCGa -3'
miRNA:   3'- cgCUCuCUUUUGUCUAu-CgGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 105468 0.71 0.882979
Target:  5'- aGCGAGgacggggagcGGAGGACGGAgcaggcgaccgGGCCC-GGCGg -3'
miRNA:   3'- -CGCUC----------UCUUUUGUCUa----------UCGGGuCCGC- -5'
21591 5' -51.2 NC_004812.1 + 54578 0.71 0.882979
Target:  5'- cGCGGGAGAcggAGGCGGAcgAGCCacccucgcGGCGg -3'
miRNA:   3'- -CGCUCUCU---UUUGUCUa-UCGGgu------CCGC- -5'
21591 5' -51.2 NC_004812.1 + 63161 0.71 0.890073
Target:  5'- aGCGGGAGAGGGgcGAccuGCCCGGGUa -3'
miRNA:   3'- -CGCUCUCUUUUguCUau-CGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 153135 0.71 0.890073
Target:  5'- cGCGGGGGGcucGGCGGcggGGCgCGGGCGg -3'
miRNA:   3'- -CGCUCUCUu--UUGUCua-UCGgGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 52278 0.71 0.890073
Target:  5'- gGCGGGGGAuGGGCGGAgaaggucacggGGCCCGgccGGCGu -3'
miRNA:   3'- -CGCUCUCU-UUUGUCUa----------UCGGGU---CCGC- -5'
21591 5' -51.2 NC_004812.1 + 35630 0.71 0.890073
Target:  5'- cGCGGGGGAGGGuuGAcguGCCgCGGGCGc -3'
miRNA:   3'- -CGCUCUCUUUUguCUau-CGG-GUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 122234 0.71 0.890073
Target:  5'- cGCGGGGGGcucGGCGGcggGGCgCGGGCGg -3'
miRNA:   3'- -CGCUCUCUu--UUGUCua-UCGgGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 123526 0.71 0.896924
Target:  5'- cGCGAGAGGGcuccAUGGGUucGGgCCGGGCGu -3'
miRNA:   3'- -CGCUCUCUUu---UGUCUA--UCgGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 117617 0.71 0.896924
Target:  5'- gGgGAGGGggGGCGGcgcgGGCcgCCGGGCGc -3'
miRNA:   3'- -CgCUCUCuuUUGUCua--UCG--GGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 122417 0.71 0.896924
Target:  5'- uCGGGuGGAcGCGcGGUgGGCCCGGGCGg -3'
miRNA:   3'- cGCUCuCUUuUGU-CUA-UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 154427 0.71 0.896924
Target:  5'- cGCGAGAGGGcuccAUGGGUucGGgCCGGGCGu -3'
miRNA:   3'- -CGCUCUCUUu---UGUCUA--UCgGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 153318 0.71 0.896924
Target:  5'- uCGGGuGGAcGCGcGGUgGGCCCGGGCGg -3'
miRNA:   3'- cGCUCuCUUuUGU-CUA-UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 148518 0.71 0.896924
Target:  5'- gGgGAGGGggGGCGGcgcgGGCcgCCGGGCGc -3'
miRNA:   3'- -CgCUCUCuuUUGUCua--UCG--GGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 29234 0.71 0.903529
Target:  5'- gGCGGGGGuc-GCGGAggagcgGGCCgGGGCu -3'
miRNA:   3'- -CGCUCUCuuuUGUCUa-----UCGGgUCCGc -5'
21591 5' -51.2 NC_004812.1 + 71419 0.71 0.903529
Target:  5'- cGUGGGGGAAGACguggguguGGAccaUGGCCCgcAGGCa -3'
miRNA:   3'- -CGCUCUCUUUUG--------UCU---AUCGGG--UCCGc -5'
21591 5' -51.2 NC_004812.1 + 154742 0.71 0.903529
Target:  5'- gGCGGGGGuc-GCGGAggagcgGGCCgGGGCu -3'
miRNA:   3'- -CGCUCUCuuuUGUCUa-----UCGGgUCCGc -5'
21591 5' -51.2 NC_004812.1 + 15332 0.71 0.903529
Target:  5'- cGCGAGGGGGAAguGAcgcagcGCCUggAGGCGu -3'
miRNA:   3'- -CGCUCUCUUUUguCUau----CGGG--UCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.