miRNA display CGI


Results 81 - 100 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 5' -51.2 NC_004812.1 + 79698 0.71 0.909885
Target:  5'- uCGGGGGGcuGCGGGUGGCCCccGCc -3'
miRNA:   3'- cGCUCUCUuuUGUCUAUCGGGucCGc -5'
21591 5' -51.2 NC_004812.1 + 156310 0.71 0.909885
Target:  5'- cCGAGGGAGGGCGGGggacgggagggGGCCgAGGgGg -3'
miRNA:   3'- cGCUCUCUUUUGUCUa----------UCGGgUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 122752 0.71 0.909885
Target:  5'- gGCGGGAGAGGGCGcgcacGGUGcGCCCgccgaGGGUGa -3'
miRNA:   3'- -CGCUCUCUUUUGU-----CUAU-CGGG-----UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 59518 0.71 0.909885
Target:  5'- gGCGGacAGggGGCGG-UAGCCgAGGCGc -3'
miRNA:   3'- -CGCUc-UCuuUUGUCuAUCGGgUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 30802 0.71 0.909885
Target:  5'- cCGAGGGAGGGCGGGggacgggagggGGCCgAGGgGg -3'
miRNA:   3'- cGCUCUCUUUUGUCUa----------UCGGgUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 85312 0.71 0.909885
Target:  5'- cGCGAcGGggGGCucGGUGGCgCCuGGCGg -3'
miRNA:   3'- -CGCUcUCuuUUGu-CUAUCG-GGuCCGC- -5'
21591 5' -51.2 NC_004812.1 + 121958 0.7 0.91599
Target:  5'- gGCGGGcuGGGccuGAGCGGcgGGCCUGGGCu -3'
miRNA:   3'- -CGCUC--UCU---UUUGUCuaUCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 151171 0.7 0.91599
Target:  5'- gGUG-GAGGAGAC----GGCCCGGGCGc -3'
miRNA:   3'- -CGCuCUCUUUUGucuaUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 155026 0.7 0.91599
Target:  5'- gGCG-GGGAGccguGCGGGggGGaCCCGGGCGg -3'
miRNA:   3'- -CGCuCUCUUu---UGUCUa-UC-GGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 5070 0.7 0.91599
Target:  5'- gGCGGGAGAcu-CGGggGGCCgGGGUc -3'
miRNA:   3'- -CGCUCUCUuuuGUCuaUCGGgUCCGc -5'
21591 5' -51.2 NC_004812.1 + 27794 0.7 0.91599
Target:  5'- cGgGGGAGAGGGCGG--GGCCgGGGgGg -3'
miRNA:   3'- -CgCUCUCUUUUGUCuaUCGGgUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 147500 0.7 0.91599
Target:  5'- cGCGGGGGu---CcGGUGGCCCcgAGGCGc -3'
miRNA:   3'- -CGCUCUCuuuuGuCUAUCGGG--UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 25663 0.7 0.91599
Target:  5'- gGUG-GAGGAGAC----GGCCCGGGCGc -3'
miRNA:   3'- -CGCuCUCUUUUGucuaUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 61203 0.7 0.91599
Target:  5'- gGCGGGGGAAcgaugGGCGGGggGGCUgGGGUGu -3'
miRNA:   3'- -CGCUCUCUU-----UUGUCUa-UCGGgUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 29442 0.7 0.91599
Target:  5'- cGCGGGGGggGGgGGAgggGGgaCGGGCGg -3'
miRNA:   3'- -CGCUCUCuuUUgUCUa--UCggGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 152859 0.7 0.91599
Target:  5'- gGCGGGcuGGGccuGAGCGGcgGGCCUGGGCu -3'
miRNA:   3'- -CGCUC--UCU---UUUGUCuaUCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 35971 0.7 0.91599
Target:  5'- gGCGGGAGAcu-CGGggGGCCgGGGUc -3'
miRNA:   3'- -CGCUCUCUuuuGUCuaUCGGgUCCGc -5'
21591 5' -51.2 NC_004812.1 + 29518 0.7 0.91599
Target:  5'- gGCG-GGGAGccguGCGGGggGGaCCCGGGCGg -3'
miRNA:   3'- -CGCuCUCUUu---UGUCUa-UC-GGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 154950 0.7 0.91599
Target:  5'- cGCGGGGGggGGgGGAgggGGgaCGGGCGg -3'
miRNA:   3'- -CGCUCUCuuUUgUCUa--UCggGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 40609 0.7 0.91599
Target:  5'- cGCGGGGGAGGGgAGGggGGCgCGGGgGa -3'
miRNA:   3'- -CGCUCUCUUUUgUCUa-UCGgGUCCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.