miRNA display CGI


Results 21 - 40 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 5' -51.2 NC_004812.1 + 150846 0.66 0.991736
Target:  5'- aGCGgacGGGGAGAGgAGAggGGCCgGaGGCGc -3'
miRNA:   3'- -CGC---UCUCUUUUgUCUa-UCGGgU-CCGC- -5'
21591 5' -51.2 NC_004812.1 + 21170 0.66 0.991736
Target:  5'- cGCG-GAGGAGgcgcugggcGCGGAgggcGUCCAGGUGc -3'
miRNA:   3'- -CGCuCUCUUU---------UGUCUau--CGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 51613 0.66 0.991736
Target:  5'- cGCGAGGGGcgccGCGGc-GGCCCGcGGCc -3'
miRNA:   3'- -CGCUCUCUuu--UGUCuaUCGGGU-CCGc -5'
21591 5' -51.2 NC_004812.1 + 105196 0.66 0.991736
Target:  5'- uGCGAGcgcGGGGcGCGGGcgcgGGcCCCGGGCu -3'
miRNA:   3'- -CGCUC---UCUUuUGUCUa---UC-GGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 70370 0.66 0.991736
Target:  5'- gGCGGGGGcGGGAUAG--GGCCaAGGCGc -3'
miRNA:   3'- -CGCUCUC-UUUUGUCuaUCGGgUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 39352 0.66 0.991736
Target:  5'- cGCcGGAGcgcuCGGcgGGCCCGGGUa -3'
miRNA:   3'- -CGcUCUCuuuuGUCuaUCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 25338 0.66 0.991736
Target:  5'- aGCGgacGGGGAGAGgAGAggGGCCgGaGGCGc -3'
miRNA:   3'- -CGC---UCUCUUUUgUCUa-UCGGgU-CCGC- -5'
21591 5' -51.2 NC_004812.1 + 109179 0.66 0.991389
Target:  5'- uGCGAGAcaaacagcagcaccGGAcACAGGUAgaugguacgguGCCCcGGCGg -3'
miRNA:   3'- -CGCUCU--------------CUUuUGUCUAU-----------CGGGuCCGC- -5'
21591 5' -51.2 NC_004812.1 + 62420 0.66 0.99127
Target:  5'- uGCGGGGGGGAggagcGCGauguccuggacuuuGGccaagacgccuucUGGCCCAGGCGc -3'
miRNA:   3'- -CGCUCUCUUU-----UGU--------------CU-------------AUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 2060 0.66 0.990908
Target:  5'- cGCGGGGGAGGgggcgcgccccccGCgucuaccaguccucgGGGcGGCCCGGGCc -3'
miRNA:   3'- -CGCUCUCUUU-------------UG---------------UCUaUCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 127569 0.66 0.990908
Target:  5'- cGCGGGGGAGGgggcgcgccccccGCgucuaccaguccucgGGGcGGCCCGGGCc -3'
miRNA:   3'- -CGCUCUCUUU-------------UG---------------UCUaUCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 152649 0.66 0.990534
Target:  5'- cGCGGcGGGggGGCGccgGGCCUccgggAGGCGg -3'
miRNA:   3'- -CGCU-CUCuuUUGUcuaUCGGG-----UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 65510 0.66 0.990534
Target:  5'- gGCGAGGGG--ACGGcgcGCCCcuGGCGc -3'
miRNA:   3'- -CGCUCUCUuuUGUCuauCGGGu-CCGC- -5'
21591 5' -51.2 NC_004812.1 + 80285 0.66 0.990534
Target:  5'- uGCGGcGGGAGAACc-----CCCAGGCGg -3'
miRNA:   3'- -CGCU-CUCUUUUGucuaucGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 35916 0.66 0.990534
Target:  5'- gGCGGGGGc-GGCAGuggGGCggCAGGCGg -3'
miRNA:   3'- -CGCUCUCuuUUGUCua-UCGg-GUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 145603 0.66 0.990534
Target:  5'- cCGGGGcGAAGGCGGAcccgUGGUCCgccgGGGCGc -3'
miRNA:   3'- cGCUCU-CUUUUGUCU----AUCGGG----UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 45085 0.66 0.990534
Target:  5'- cCGGGGGAAAGCc---GGCCggCGGGCGg -3'
miRNA:   3'- cGCUCUCUUUUGucuaUCGG--GUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 134277 0.66 0.990534
Target:  5'- cCGAGucuaGGGGAAcCAGGUccAGCCCcGGCGc -3'
miRNA:   3'- cGCUC----UCUUUU-GUCUA--UCGGGuCCGC- -5'
21591 5' -51.2 NC_004812.1 + 106756 0.66 0.990534
Target:  5'- cGCGGGGGGGu-CGGAggaggGGCggcgUCGGGCGg -3'
miRNA:   3'- -CGCUCUCUUuuGUCUa----UCG----GGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 31834 0.66 0.989749
Target:  5'- cGCGGGAccagcGAGAccgagcgccggcuccACAGccAGCCgGGGCGg -3'
miRNA:   3'- -CGCUCU-----CUUU---------------UGUCuaUCGGgUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.