miRNA display CGI


Results 41 - 60 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 5' -51.2 NC_004812.1 + 78626 0.66 0.989198
Target:  5'- gGCGGGgggcuguucguuGGAAGACGG--GGCCgGGGCc -3'
miRNA:   3'- -CGCUC------------UCUUUUGUCuaUCGGgUCCGc -5'
21591 5' -51.2 NC_004812.1 + 110735 0.66 0.989198
Target:  5'- gGCGGGAGAcccucGCGGA-GGUCUugGGGCGu -3'
miRNA:   3'- -CGCUCUCUuu---UGUCUaUCGGG--UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 2977 0.66 0.989198
Target:  5'- aGCGccGAGAcgucGGGCGGccgGUccaguugccGGCCCAGGCGg -3'
miRNA:   3'- -CGCu-CUCU----UUUGUC---UA---------UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 13112 0.66 0.989198
Target:  5'- gGCG-GAGGcgugUAGAUgcGGCUCGGGCGg -3'
miRNA:   3'- -CGCuCUCUuuu-GUCUA--UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 154202 0.66 0.989057
Target:  5'- gGCGGG-GggGACGGGUguaggugAGUCgCGGGCc -3'
miRNA:   3'- -CGCUCuCuuUUGUCUA-------UCGG-GUCCGc -5'
21591 5' -51.2 NC_004812.1 + 109449 0.66 0.989057
Target:  5'- cCGAGGGAGAgggcggcGCGGGggcGCCCgcGGGCu -3'
miRNA:   3'- cGCUCUCUUU-------UGUCUau-CGGG--UCCGc -5'
21591 5' -51.2 NC_004812.1 + 123301 0.66 0.989057
Target:  5'- gGCGGG-GggGACGGGUguaggugAGUCgCGGGCc -3'
miRNA:   3'- -CGCUCuCuuUUGUCUA-------UCGG-GUCCGc -5'
21591 5' -51.2 NC_004812.1 + 87078 0.66 0.98772
Target:  5'- gGCGcGGGggGGCGGccGGaCCC-GGCGg -3'
miRNA:   3'- -CGCuCUCuuUUGUCuaUC-GGGuCCGC- -5'
21591 5' -51.2 NC_004812.1 + 99412 0.66 0.98772
Target:  5'- cGCGGGccGGAGACAGAccGGaCCCccGGCGg -3'
miRNA:   3'- -CGCUCu-CUUUUGUCUa-UC-GGGu-CCGC- -5'
21591 5' -51.2 NC_004812.1 + 27000 0.66 0.98772
Target:  5'- gGCGccGGGGAGGACGGccccGCCgGGGCc -3'
miRNA:   3'- -CGC--UCUCUUUUGUCuau-CGGgUCCGc -5'
21591 5' -51.2 NC_004812.1 + 54724 0.66 0.98772
Target:  5'- gGgGAGGGGAGGgGGAggGGgCCGGcGCGg -3'
miRNA:   3'- -CgCUCUCUUUUgUCUa-UCgGGUC-CGC- -5'
21591 5' -51.2 NC_004812.1 + 74058 0.66 0.98772
Target:  5'- gGCGcuGGAGGGCuuccUGGCCaCGGGCGg -3'
miRNA:   3'- -CGCucUCUUUUGucu-AUCGG-GUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 152509 0.66 0.98772
Target:  5'- gGCGccGGGGAGGACGGccccGCCgGGGCc -3'
miRNA:   3'- -CGC--UCUCUUUUGUCuau-CGGgUCCGc -5'
21591 5' -51.2 NC_004812.1 + 107969 0.66 0.98772
Target:  5'- cGCGGGAucGGAUAGAgAGgCgGGGCGu -3'
miRNA:   3'- -CGCUCUcuUUUGUCUaUCgGgUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 112895 0.66 0.98772
Target:  5'- gGCGAGAcGAcggcGACGGAgcGCCCucgccgcgaAGGCa -3'
miRNA:   3'- -CGCUCU-CUu---UUGUCUauCGGG---------UCCGc -5'
21591 5' -51.2 NC_004812.1 + 80050 0.66 0.98772
Target:  5'- cGCGGGGGGucGCuGccGGCCgAGGCc -3'
miRNA:   3'- -CGCUCUCUuuUGuCuaUCGGgUCCGc -5'
21591 5' -51.2 NC_004812.1 + 73232 0.66 0.98772
Target:  5'- uGCGGGuc-GGGCGGGcGGCCCgcccccAGGCGg -3'
miRNA:   3'- -CGCUCucuUUUGUCUaUCGGG------UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 56411 0.66 0.98772
Target:  5'- gGUGAcGuGAuuGCAGAUgcgguccgccaGGCgCCGGGCGa -3'
miRNA:   3'- -CGCU-CuCUuuUGUCUA-----------UCG-GGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 121811 0.66 0.98772
Target:  5'- gGCGGGGGcggccucgGAGGCGGA--GgCCGGGCGc -3'
miRNA:   3'- -CGCUCUC--------UUUUGUCUauCgGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 46293 0.66 0.98772
Target:  5'- gGCGgccGGAGGccGCGGcgGGCCgcgCGGGCGa -3'
miRNA:   3'- -CGC---UCUCUuuUGUCuaUCGG---GUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.