miRNA display CGI


Results 61 - 80 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 5' -51.2 NC_004812.1 + 112895 0.66 0.98772
Target:  5'- gGCGAGAcGAcggcGACGGAgcGCCCucgccgcgaAGGCa -3'
miRNA:   3'- -CGCUCU-CUu---UUGUCUauCGGG---------UCCGc -5'
21591 5' -51.2 NC_004812.1 + 62924 0.67 0.986091
Target:  5'- cCGGGGGAcgGCGG-UGGCgaGGGCGa -3'
miRNA:   3'- cGCUCUCUuuUGUCuAUCGggUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 138082 0.67 0.986091
Target:  5'- cGCGAGcGcGAGC-GA-AGCCCuGGCGg -3'
miRNA:   3'- -CGCUCuCuUUUGuCUaUCGGGuCCGC- -5'
21591 5' -51.2 NC_004812.1 + 149437 0.67 0.986091
Target:  5'- gGCGAGAGggGACAcGU--CCCAGaCGa -3'
miRNA:   3'- -CGCUCUCuuUUGUcUAucGGGUCcGC- -5'
21591 5' -51.2 NC_004812.1 + 103226 0.67 0.986091
Target:  5'- uGCGGGAGcuccuccgcGAGCAGGagcGGCggCCGGGCGa -3'
miRNA:   3'- -CGCUCUCu--------UUUGUCUa--UCG--GGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 29778 0.67 0.986091
Target:  5'- -gGGGAGggGcggggcGCGGcggGGCCCGGGgGu -3'
miRNA:   3'- cgCUCUCuuU------UGUCua-UCGGGUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 205 0.67 0.986091
Target:  5'- cCGGGGGAGGGCccGGGUcgcgcAGCCCcGGCc -3'
miRNA:   3'- cGCUCUCUUUUG--UCUA-----UCGGGuCCGc -5'
21591 5' -51.2 NC_004812.1 + 37196 0.67 0.986091
Target:  5'- gGCcAGGGGGAGCGGcgccCCCGGGCa -3'
miRNA:   3'- -CGcUCUCUUUUGUCuaucGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 125714 0.67 0.986091
Target:  5'- cCGGGGGAGGGCccGGGUcgcgcAGCCCcGGCc -3'
miRNA:   3'- cGCUCUCUUUUG--UCUA-----UCGGGuCCGc -5'
21591 5' -51.2 NC_004812.1 + 6295 0.67 0.986091
Target:  5'- gGCcAGGGGGAGCGGcgccCCCGGGCa -3'
miRNA:   3'- -CGcUCUCUUUUGUCuaucGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 155286 0.67 0.986091
Target:  5'- -gGGGAGggGcggggcGCGGcggGGCCCGGGgGu -3'
miRNA:   3'- cgCUCUCuuU------UGUCua-UCGGGUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 136894 0.67 0.986091
Target:  5'- -gGAGGGGGgcGACGGGUacgccguugGGCCCgAGGCc -3'
miRNA:   3'- cgCUCUCUU--UUGUCUA---------UCGGG-UCCGc -5'
21591 5' -51.2 NC_004812.1 + 38643 0.67 0.986091
Target:  5'- aGCGGGGGGuuGAACAGc---CCCAGGgGc -3'
miRNA:   3'- -CGCUCUCU--UUUGUCuaucGGGUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 118536 0.67 0.986091
Target:  5'- gGCGAGAGggGACAcGU--CCCAGaCGa -3'
miRNA:   3'- -CGCUCUCuuUUGUcUAucGGGUCcGC- -5'
21591 5' -51.2 NC_004812.1 + 4979 0.67 0.986091
Target:  5'- gGCGAGGcGggGGCGacgGGUCCGGGUc -3'
miRNA:   3'- -CGCUCU-CuuUUGUcuaUCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 11318 0.67 0.984301
Target:  5'- cGCGGGGcGggGGCcGGUGGgCUGGGCc -3'
miRNA:   3'- -CGCUCU-CuuUUGuCUAUCgGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 47686 0.67 0.984301
Target:  5'- -aGGGGGAAAcccGCGGccgcgGGCCCccGGGCGu -3'
miRNA:   3'- cgCUCUCUUU---UGUCua---UCGGG--UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 102390 0.67 0.984301
Target:  5'- -gGAGGGGGgcacGACGGAagcGCCCgcGGGCGg -3'
miRNA:   3'- cgCUCUCUU----UUGUCUau-CGGG--UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 36257 0.67 0.984301
Target:  5'- cCGGGAGAGgcGGCAGAcucgGGCUCucccgcGGCGg -3'
miRNA:   3'- cGCUCUCUU--UUGUCUa---UCGGGu-----CCGC- -5'
21591 5' -51.2 NC_004812.1 + 37241 0.67 0.984301
Target:  5'- -gGAGGGgcAGCAGggGGCggCAGGCGc -3'
miRNA:   3'- cgCUCUCuuUUGUCuaUCGg-GUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.