miRNA display CGI


Results 81 - 100 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 5' -51.2 NC_004812.1 + 40000 0.67 0.984301
Target:  5'- gGCGAGcGGccgcGACAGAcgcggcGGCCCGcGGCGg -3'
miRNA:   3'- -CGCUCuCUu---UUGUCUa-----UCGGGU-CCGC- -5'
21591 5' -51.2 NC_004812.1 + 5356 0.67 0.984301
Target:  5'- cCGGGAGAGgcGGCAGAcucgGGCUCucccgcGGCGg -3'
miRNA:   3'- cGCUCUCUU--UUGUCUa---UCGGGu-----CCGC- -5'
21591 5' -51.2 NC_004812.1 + 9744 0.67 0.984301
Target:  5'- cCGGGAGggGACcgccaccaGGCCCGcGGCGc -3'
miRNA:   3'- cGCUCUCuuUUGucua----UCGGGU-CCGC- -5'
21591 5' -51.2 NC_004812.1 + 101016 0.67 0.984301
Target:  5'- gGCGcGAGgcAGCGGAUcGCCUcgGGGUGc -3'
miRNA:   3'- -CGCuCUCuuUUGUCUAuCGGG--UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 102390 0.67 0.984301
Target:  5'- -gGAGGGGGgcacGACGGAagcGCCCgcGGGCGg -3'
miRNA:   3'- cgCUCUCUU----UUGUCUau-CGGG--UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 37241 0.67 0.984301
Target:  5'- -gGAGGGgcAGCAGggGGCggCAGGCGc -3'
miRNA:   3'- cgCUCUCuuUUGUCuaUCGg-GUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 107392 0.67 0.984112
Target:  5'- gGUGAGGGGGccgccgccgaaacGGCGGGUGcGgCCAGGCc -3'
miRNA:   3'- -CGCUCUCUU-------------UUGUCUAU-CgGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 36263 0.67 0.982341
Target:  5'- cGCGGGuugcaGGGGCGGcgaaaGUAGUCCAGGCu -3'
miRNA:   3'- -CGCUCuc---UUUUGUC-----UAUCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 58776 0.67 0.982341
Target:  5'- gGCGAGcGAGGGCGcGGUGGgcuuUCCGGGCc -3'
miRNA:   3'- -CGCUCuCUUUUGU-CUAUC----GGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 77121 0.67 0.982341
Target:  5'- cGCGGGGGcgguGGCGGucggugaggAGgCCGGGCGg -3'
miRNA:   3'- -CGCUCUCuu--UUGUCua-------UCgGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 69010 0.67 0.982341
Target:  5'- uGCGGGGcGggGAguGcgAGgCCGGGCc -3'
miRNA:   3'- -CGCUCU-CuuUUguCuaUCgGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 4634 0.67 0.982341
Target:  5'- gGCGGGGGG--GCGGGacGCCCGcGCGg -3'
miRNA:   3'- -CGCUCUCUuuUGUCUauCGGGUcCGC- -5'
21591 5' -51.2 NC_004812.1 + 93854 0.67 0.982341
Target:  5'- cGC-AGAGGucGCGGggGGCCC-GGCa -3'
miRNA:   3'- -CGcUCUCUuuUGUCuaUCGGGuCCGc -5'
21591 5' -51.2 NC_004812.1 + 114986 0.67 0.982341
Target:  5'- gGCGuAGAGAAAACAacguuuaauGUAGaaaagacacCCCGGGCGg -3'
miRNA:   3'- -CGC-UCUCUUUUGUc--------UAUC---------GGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 104673 0.67 0.982341
Target:  5'- uGCGGGGGuGGGACAGGUcccacagcugGGCCgccgccaugCGGGCGu -3'
miRNA:   3'- -CGCUCUC-UUUUGUCUA----------UCGG---------GUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 134679 0.67 0.982341
Target:  5'- cGCGAGgaGGggGGCGGAgccgccgAGCCgCcGGCu -3'
miRNA:   3'- -CGCUC--UCuuUUGUCUa------UCGG-GuCCGc -5'
21591 5' -51.2 NC_004812.1 + 35535 0.67 0.982341
Target:  5'- gGCGGGGGG--GCGGGacGCCCGcGCGg -3'
miRNA:   3'- -CGCUCUCUuuUGUCUauCGGGUcCGC- -5'
21591 5' -51.2 NC_004812.1 + 68575 0.67 0.982341
Target:  5'- aGCGGGAcaGGGACAGGccGGCCCuccGGGUGa -3'
miRNA:   3'- -CGCUCUc-UUUUGUCUa-UCGGG---UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 50511 0.67 0.982341
Target:  5'- cGCGAGAcucagucGGACAGAggaGGCgCAGGCc -3'
miRNA:   3'- -CGCUCUcu-----UUUGUCUa--UCGgGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 80057 0.67 0.982135
Target:  5'- cCGAGAGcacggucGAGGCGGccguccgGGCCCAGGgCGu -3'
miRNA:   3'- cGCUCUC-------UUUUGUCua-----UCGGGUCC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.