miRNA display CGI


Results 101 - 120 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 5' -51.2 NC_004812.1 + 80057 0.67 0.982135
Target:  5'- cCGAGAGcacggucGAGGCGGccguccgGGCCCAGGgCGu -3'
miRNA:   3'- cGCUCUC-------UUUUGUCua-----UCGGGUCC-GC- -5'
21591 5' -51.2 NC_004812.1 + 139335 0.67 0.981718
Target:  5'- cCGAGAuuuucacGAAGGCGGAggcggucgcgugGGCCCGGGgGc -3'
miRNA:   3'- cGCUCU-------CUUUUGUCUa-----------UCGGGUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 142043 0.67 0.980202
Target:  5'- aCGAGGacGAGCAGGc--CCCGGGCGa -3'
miRNA:   3'- cGCUCUcuUUUGUCUaucGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 116905 0.67 0.980202
Target:  5'- cCGAGAG--------UAGCCCGGGCGg -3'
miRNA:   3'- cGCUCUCuuuugucuAUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 77960 0.67 0.980202
Target:  5'- gGCGGGGGcGAAgAGGguGUCCGGGCc -3'
miRNA:   3'- -CGCUCUCuUUUgUCUauCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 153683 0.67 0.980202
Target:  5'- cCGAGGgugacGAGGACGGGgcgGGCucccCCGGGCGg -3'
miRNA:   3'- cGCUCU-----CUUUUGUCUa--UCG----GGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 147806 0.67 0.980202
Target:  5'- cCGAGAG--------UAGCCCGGGCGg -3'
miRNA:   3'- cGCUCUCuuuugucuAUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 154718 0.67 0.980202
Target:  5'- aCGGGGugccGCGGGcggGGCCCGGGCGc -3'
miRNA:   3'- cGCUCUcuuuUGUCUa--UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 123817 0.67 0.980202
Target:  5'- aCGGGGugccGCGGGcggGGCCCGGGCGc -3'
miRNA:   3'- cGCUCUcuuuUGUCUa--UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 37344 0.67 0.977876
Target:  5'- gGCGGGGGGAccgccgggacGACcGcgGGCCCGGGg- -3'
miRNA:   3'- -CGCUCUCUU----------UUGuCuaUCGGGUCCgc -5'
21591 5' -51.2 NC_004812.1 + 98492 0.67 0.977876
Target:  5'- cGUGGGuGggGcggcGCGGGgcgccgGGuCCCGGGCGg -3'
miRNA:   3'- -CGCUCuCuuU----UGUCUa-----UC-GGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 71742 0.67 0.977876
Target:  5'- gGCGGGAGAcguGGGuCGGGUugGGCCggucgcugcgaCAGGCGg -3'
miRNA:   3'- -CGCUCUCU---UUU-GUCUA--UCGG-----------GUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 66290 0.67 0.977876
Target:  5'- gGCGAGGauGAGcgccucgcggcuGGCGGc--GCCCAGGCGc -3'
miRNA:   3'- -CGCUCU--CUU------------UUGUCuauCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 16768 0.67 0.977876
Target:  5'- cGCGGGcccGAAGACgcgugGGGcGGCCgAGGCGa -3'
miRNA:   3'- -CGCUCu--CUUUUG-----UCUaUCGGgUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 6443 0.67 0.977876
Target:  5'- gGCGGGGGGAccgccgggacGACcGcgGGCCCGGGg- -3'
miRNA:   3'- -CGCUCUCUU----------UUGuCuaUCGGGUCCgc -5'
21591 5' -51.2 NC_004812.1 + 32756 0.67 0.977876
Target:  5'- aUGAGAGcccgcCGGGggccuccauUGGCCCGGGCGc -3'
miRNA:   3'- cGCUCUCuuuu-GUCU---------AUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 132972 0.67 0.977876
Target:  5'- gGCGAGGGucacGCGGAc-GCCCgucuGGGCGc -3'
miRNA:   3'- -CGCUCUCuuu-UGUCUauCGGG----UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 137807 0.67 0.977876
Target:  5'- gGCGAGGGcgccGCGGAgcaGGCCCccuGGCc -3'
miRNA:   3'- -CGCUCUCuuu-UGUCUa--UCGGGu--CCGc -5'
21591 5' -51.2 NC_004812.1 + 81583 0.67 0.977876
Target:  5'- aGCaGAccGAGAAGGCGGccgAGCuggaCCAGGCGg -3'
miRNA:   3'- -CG-CU--CUCUUUUGUCua-UCG----GGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 50016 0.67 0.977876
Target:  5'- cGCGGGAGAcuccaucgcgccGucuGCGcccGGCCCGGGCGc -3'
miRNA:   3'- -CGCUCUCU------------Uu--UGUcuaUCGGGUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.