miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 5' -51.2 NC_004812.1 + 205 0.67 0.986091
Target:  5'- cCGGGGGAGGGCccGGGUcgcgcAGCCCcGGCc -3'
miRNA:   3'- cGCUCUCUUUUG--UCUA-----UCGGGuCCGc -5'
21591 5' -51.2 NC_004812.1 + 625 0.68 0.973744
Target:  5'- cGCGAgGGGAGGACAGccgggaucgaGUgcgcccaccaacgccGcGCCCGGGCGg -3'
miRNA:   3'- -CGCU-CUCUUUUGUC----------UA---------------U-CGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 1855 0.67 0.977876
Target:  5'- aUGAGAGcccgcCGGGggccuccauUGGCCCGGGCGc -3'
miRNA:   3'- cGCUCUCuuuu-GUCU---------AUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 2060 0.66 0.990908
Target:  5'- cGCGGGGGAGGgggcgcgccccccGCgucuaccaguccucgGGGcGGCCCGGGCc -3'
miRNA:   3'- -CGCUCUCUUU-------------UG---------------UCUaUCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 2977 0.66 0.989198
Target:  5'- aGCGccGAGAcgucGGGCGGccgGUccaguugccGGCCCAGGCGg -3'
miRNA:   3'- -CGCu-CUCU----UUUGUC---UA---------UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 3056 0.7 0.925785
Target:  5'- gGCGAGcAGGAAGgAGAggccgccgcgcgcgUcGGUCCAGGCGg -3'
miRNA:   3'- -CGCUC-UCUUUUgUCU--------------A-UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 3231 0.68 0.963159
Target:  5'- gGCGGGccGAAGGCgcggccGGAgccgGGCUCGGGCGg -3'
miRNA:   3'- -CGCUCu-CUUUUG------UCUa---UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 4634 0.67 0.982341
Target:  5'- gGCGGGGGG--GCGGGacGCCCGcGCGg -3'
miRNA:   3'- -CGCUCUCUuuUGUCUauCGGGUcCGC- -5'
21591 5' -51.2 NC_004812.1 + 4745 0.72 0.860297
Target:  5'- cCGGGAGGAGACAGAgagagaGGCggagaCGGGCGc -3'
miRNA:   3'- cGCUCUCUUUUGUCUa-----UCGg----GUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 4783 0.7 0.921841
Target:  5'- uGgGGGAGggGGCGGGgcgagggcUGGUgCGGGCGc -3'
miRNA:   3'- -CgCUCUCuuUUGUCU--------AUCGgGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 4979 0.67 0.986091
Target:  5'- gGCGAGGcGggGGCGacgGGUCCGGGUc -3'
miRNA:   3'- -CGCUCU-CuuUUGUcuaUCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 5014 0.68 0.966538
Target:  5'- gGCGGGGGc-GGCAGGUggGGCggCAGGCGg -3'
miRNA:   3'- -CGCUCUCuuUUGUCUA--UCGg-GUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 5070 0.7 0.91599
Target:  5'- gGCGGGAGAcu-CGGggGGCCgGGGUc -3'
miRNA:   3'- -CGCUCUCUuuuGUCuaUCGGgUCCGc -5'
21591 5' -51.2 NC_004812.1 + 5130 0.69 0.951614
Target:  5'- gGCGGGcgcGGAGGCGGGagGGCCgCGGGCc -3'
miRNA:   3'- -CGCUCu--CUUUUGUCUa-UCGG-GUCCGc -5'
21591 5' -51.2 NC_004812.1 + 5356 0.67 0.984301
Target:  5'- cCGGGAGAGgcGGCAGAcucgGGCUCucccgcGGCGg -3'
miRNA:   3'- cGCUCUCUU--UUGUCUa---UCGGGu-----CCGC- -5'
21591 5' -51.2 NC_004812.1 + 5661 0.69 0.955702
Target:  5'- cGCGAGGGGAGcccGCAGGggcacgggGGgCCGGGgGu -3'
miRNA:   3'- -CGCUCUCUUU---UGUCUa-------UCgGGUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 5730 0.74 0.761868
Target:  5'- cGCGGGAGGAGGgcgcCGGGcgccGCCCAGGCc -3'
miRNA:   3'- -CGCUCUCUUUU----GUCUau--CGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 5859 0.69 0.955304
Target:  5'- gGCGGGGGGAAcaugggcGCGGGccggggGGCgCGGGCGc -3'
miRNA:   3'- -CGCUCUCUUU-------UGUCUa-----UCGgGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 6146 0.84 0.296102
Target:  5'- gGCGAGGGGAAGgGGGUcgggGGCCUGGGCGg -3'
miRNA:   3'- -CGCUCUCUUUUgUCUA----UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 6176 0.7 0.937865
Target:  5'- gGCGGGGGuuGggucGCGGA-GGCCCGGgGCGc -3'
miRNA:   3'- -CGCUCUCuuU----UGUCUaUCGGGUC-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.