miRNA display CGI


Results 21 - 40 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 5' -51.2 NC_004812.1 + 6295 0.67 0.986091
Target:  5'- gGCcAGGGGGAGCGGcgccCCCGGGCa -3'
miRNA:   3'- -CGcUCUCUUUUGUCuaucGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 6340 0.67 0.984301
Target:  5'- -gGAGGGgcAGCAGggGGCggCAGGCGc -3'
miRNA:   3'- cgCUCUCuuUUGUCuaUCGg-GUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 6443 0.67 0.977876
Target:  5'- gGCGGGGGGAccgccgggacGACcGcgGGCCCGGGg- -3'
miRNA:   3'- -CGCUCUCUU----------UUGuCuaUCGGGUCCgc -5'
21591 5' -51.2 NC_004812.1 + 6527 0.72 0.875649
Target:  5'- aGCaGGGGggGGCGGggGGCCgAGGgGg -3'
miRNA:   3'- -CGcUCUCuuUUGUCuaUCGGgUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 7484 0.7 0.927437
Target:  5'- gGCGAGGGGGAugGGGgggggacggUGGgCCGGaGCGa -3'
miRNA:   3'- -CGCUCUCUUUugUCU---------AUCgGGUC-CGC- -5'
21591 5' -51.2 NC_004812.1 + 7970 0.68 0.963159
Target:  5'- cCGAGAGAc-GCGGAggcGCgCGGGCGc -3'
miRNA:   3'- cGCUCUCUuuUGUCUau-CGgGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 8451 0.66 0.991736
Target:  5'- cGCcGGAGcgcuCGGcgGGCCCGGGUa -3'
miRNA:   3'- -CGcUCUCuuuuGUCuaUCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 8634 0.69 0.94728
Target:  5'- cGCGAGGGGcggggGAGCGGGcGGCCauuagAGGCu -3'
miRNA:   3'- -CGCUCUCU-----UUUGUCUaUCGGg----UCCGc -5'
21591 5' -51.2 NC_004812.1 + 9744 0.67 0.984301
Target:  5'- cCGGGAGggGACcgccaccaGGCCCGcGGCGc -3'
miRNA:   3'- cGCUCUCuuUUGucua----UCGGGU-CCGC- -5'
21591 5' -51.2 NC_004812.1 + 11318 0.67 0.984301
Target:  5'- cGCGGGGcGggGGCcGGUGGgCUGGGCc -3'
miRNA:   3'- -CGCUCU-CuuUUGuCUAUCgGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 12852 0.66 0.992814
Target:  5'- cGCGGGAGGAAccGCGGGgaagaaccGCCgCGacGGCGg -3'
miRNA:   3'- -CGCUCUCUUU--UGUCUau------CGG-GU--CCGC- -5'
21591 5' -51.2 NC_004812.1 + 13112 0.66 0.989198
Target:  5'- gGCG-GAGGcgugUAGAUgcGGCUCGGGCGg -3'
miRNA:   3'- -CGCuCUCUuuu-GUCUA--UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 14555 0.72 0.875649
Target:  5'- cGCGaAGGGAAAcucccGCAGGggcaGGCCCgcGGGCGu -3'
miRNA:   3'- -CGC-UCUCUUU-----UGUCUa---UCGGG--UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 15332 0.71 0.903529
Target:  5'- cGCGAGGGGGAAguGAcgcagcGCCUggAGGCGu -3'
miRNA:   3'- -CGCUCUCUUUUguCUau----CGGG--UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 16083 0.73 0.827018
Target:  5'- aCGGGAGGAAACGGGccuggAGUCuCGGGCa -3'
miRNA:   3'- cGCUCUCUUUUGUCUa----UCGG-GUCCGc -5'
21591 5' -51.2 NC_004812.1 + 16637 0.72 0.873404
Target:  5'- cGCGAGGGcGugggcggccaggcuGAGCAGGaagagaaagucUAGCCCGGGUGa -3'
miRNA:   3'- -CGCUCUC-U--------------UUUGUCU-----------AUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 16768 0.67 0.977876
Target:  5'- cGCGGGcccGAAGACgcgugGGGcGGCCgAGGCGa -3'
miRNA:   3'- -CGCUCu--CUUUUG-----UCUaUCGGgUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 16770 0.78 0.543835
Target:  5'- cGCGGGGGccgGAGGguGAgggGGCCCAGGUGg -3'
miRNA:   3'- -CGCUCUC---UUUUguCUa--UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 16824 0.66 0.991736
Target:  5'- cCGAgGAGGAGACGGcgGccgccGCCCuuAGGCGc -3'
miRNA:   3'- cGCU-CUCUUUUGUCuaU-----CGGG--UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 16830 0.72 0.860297
Target:  5'- cGCGGGgucGGGGggUAGGggugggAGUCCGGGCGg -3'
miRNA:   3'- -CGCUC---UCUUuuGUCUa-----UCGGGUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.