miRNA display CGI


Results 61 - 80 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 5' -51.2 NC_004812.1 + 29352 0.69 0.942698
Target:  5'- uGCGAGGGGGcGCGGGcucgGGCCgCggAGGCGc -3'
miRNA:   3'- -CGCUCUCUUuUGUCUa---UCGG-G--UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 29442 0.7 0.91599
Target:  5'- cGCGGGGGggGGgGGAgggGGgaCGGGCGg -3'
miRNA:   3'- -CGCUCUCuuUUgUCUa--UCggGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 29518 0.7 0.91599
Target:  5'- gGCG-GGGAGccguGCGGGggGGaCCCGGGCGg -3'
miRNA:   3'- -CGCuCUCUUu---UGUCUa-UC-GGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 29778 0.67 0.986091
Target:  5'- -gGGGAGggGcggggcGCGGcggGGCCCGGGgGu -3'
miRNA:   3'- cgCUCUCuuU------UGUCua-UCGGGUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 29937 0.72 0.868086
Target:  5'- gGCGcGAGGGAGCGGggGGC-CGGGCu -3'
miRNA:   3'- -CGCuCUCUUUUGUCuaUCGgGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 30050 0.72 0.860297
Target:  5'- gGCGGGGGAGGGgGGAggggcgcGCgCGGGCGg -3'
miRNA:   3'- -CGCUCUCUUUUgUCUau-----CGgGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 30373 0.74 0.761868
Target:  5'- gGCGGGGGAGgggaggGGCGGGgccggcGCCCGGGCu -3'
miRNA:   3'- -CGCUCUCUU------UUGUCUau----CGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 30504 0.66 0.993777
Target:  5'- cGCGGGGGAGG--GGAc-GCCCGGGg- -3'
miRNA:   3'- -CGCUCUCUUUugUCUauCGGGUCCgc -5'
21591 5' -51.2 NC_004812.1 + 30590 0.68 0.972629
Target:  5'- gGCGGGAGAcAGCGGGgaccggGGgCCGGGa- -3'
miRNA:   3'- -CGCUCUCUuUUGUCUa-----UCgGGUCCgc -5'
21591 5' -51.2 NC_004812.1 + 30802 0.71 0.909885
Target:  5'- cCGAGGGAGGGCGGGggacgggagggGGCCgAGGgGg -3'
miRNA:   3'- cGCUCUCUUUUGUCUa----------UCGGgUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 30802 0.72 0.849845
Target:  5'- cGCGGGccgagggccccacgGGggGGCAGGgcGGCgCCAGGCGc -3'
miRNA:   3'- -CGCUC--------------UCuuUUGUCUa-UCG-GGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 30864 0.68 0.966538
Target:  5'- gGgGGGAgGAGAGCGGGgccgcgggGGCCgGGGCu -3'
miRNA:   3'- -CgCUCU-CUUUUGUCUa-------UCGGgUCCGc -5'
21591 5' -51.2 NC_004812.1 + 31526 0.68 0.973744
Target:  5'- cGCGAgGGGAGGACAGccgggaucgaGUgcgcccaccaacgccGcGCCCGGGCGg -3'
miRNA:   3'- -CGCU-CUCUUUUGUC----------UA---------------U-CGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 31834 0.66 0.989749
Target:  5'- cGCGGGAccagcGAGAccgagcgccggcuccACAGccAGCCgGGGCGg -3'
miRNA:   3'- -CGCUCU-----CUUU---------------UGUCuaUCGGgUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 32643 0.66 0.993777
Target:  5'- aGCGAGAc-GAACAGccccCCCGGGCu -3'
miRNA:   3'- -CGCUCUcuUUUGUCuaucGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 32676 0.76 0.659254
Target:  5'- cGCGGGAGGAGGCcGGgccGGCCCGGGa- -3'
miRNA:   3'- -CGCUCUCUUUUGuCUa--UCGGGUCCgc -5'
21591 5' -51.2 NC_004812.1 + 32756 0.67 0.977876
Target:  5'- aUGAGAGcccgcCGGGggccuccauUGGCCCGGGCGc -3'
miRNA:   3'- cGCUCUCuuuu-GUCU---------AUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 32830 0.74 0.781243
Target:  5'- aCGAGuGggGGCGGGgggcGGCCCccaGGGCGg -3'
miRNA:   3'- cGCUCuCuuUUGUCUa---UCGGG---UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 32896 0.73 0.835642
Target:  5'- cCGAGAugauGAGGuggauCAGcgAGCCCGGGCGu -3'
miRNA:   3'- cGCUCU----CUUUu----GUCuaUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 35535 0.67 0.982341
Target:  5'- gGCGGGGGG--GCGGGacGCCCGcGCGg -3'
miRNA:   3'- -CGCUCUCUuuUGUCUauCGGGUcCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.