miRNA display CGI


Results 81 - 100 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 5' -51.2 NC_004812.1 + 35544 0.69 0.959175
Target:  5'- cGCGGGGGGc-GCGGGcggGGCCCggauagagggaggGGGCGg -3'
miRNA:   3'- -CGCUCUCUuuUGUCUa--UCGGG-------------UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 35630 0.71 0.890073
Target:  5'- cGCGGGGGAGGGuuGAcguGCCgCGGGCGc -3'
miRNA:   3'- -CGCUCUCUUUUguCUau-CGG-GUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 35646 0.72 0.860297
Target:  5'- cCGGGAGGAGACAGAgagagaGGCggagaCGGGCGc -3'
miRNA:   3'- cGCUCUCUUUUGUCUa-----UCGg----GUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 35684 0.7 0.921841
Target:  5'- uGgGGGAGggGGCGGGgcgagggcUGGUgCGGGCGc -3'
miRNA:   3'- -CgCUCUCuuUUGUCU--------AUCGgGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 35916 0.66 0.990534
Target:  5'- gGCGGGGGc-GGCAGuggGGCggCAGGCGg -3'
miRNA:   3'- -CGCUCUCuuUUGUCua-UCGg-GUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 35971 0.7 0.91599
Target:  5'- gGCGGGAGAcu-CGGggGGCCgGGGUc -3'
miRNA:   3'- -CGCUCUCUuuuGUCuaUCGGgUCCGc -5'
21591 5' -51.2 NC_004812.1 + 36031 0.69 0.951614
Target:  5'- gGCGGGcgcGGAGGCGGGagGGCCgCGGGCc -3'
miRNA:   3'- -CGCUCu--CUUUUGUCUa-UCGG-GUCCGc -5'
21591 5' -51.2 NC_004812.1 + 36134 0.69 0.942698
Target:  5'- cGCuGGGAGGcccACGGGuUGGCCguGGCGg -3'
miRNA:   3'- -CG-CUCUCUuu-UGUCU-AUCGGguCCGC- -5'
21591 5' -51.2 NC_004812.1 + 36257 0.67 0.984301
Target:  5'- cCGGGAGAGgcGGCAGAcucgGGCUCucccgcGGCGg -3'
miRNA:   3'- cGCUCUCUU--UUGUCUa---UCGGGu-----CCGC- -5'
21591 5' -51.2 NC_004812.1 + 36263 0.67 0.982341
Target:  5'- cGCGGGuugcaGGGGCGGcgaaaGUAGUCCAGGCu -3'
miRNA:   3'- -CGCUCuc---UUUUGUC-----UAUCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 36562 0.69 0.955702
Target:  5'- cGCGAGGGGAGcccGCAGGggcacgggGGgCCGGGgGu -3'
miRNA:   3'- -CGCUCUCUUU---UGUCUa-------UCgGGUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 36631 0.74 0.761868
Target:  5'- cGCGGGAGGAGGgcgcCGGGcgccGCCCAGGCc -3'
miRNA:   3'- -CGCUCUCUUUU----GUCUau--CGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 36760 0.69 0.955304
Target:  5'- gGCGGGGGGAAcaugggcGCGGGccggggGGCgCGGGCGc -3'
miRNA:   3'- -CGCUCUCUUU-------UGUCUa-----UCGgGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 37047 0.84 0.296102
Target:  5'- gGCGAGGGGAAGgGGGUcgggGGCCUGGGCGg -3'
miRNA:   3'- -CGCUCUCUUUUgUCUA----UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 37077 0.7 0.937865
Target:  5'- gGCGGGGGuuGggucGCGGA-GGCCCGGgGCGc -3'
miRNA:   3'- -CGCUCUCuuU----UGUCUaUCGGGUC-CGC- -5'
21591 5' -51.2 NC_004812.1 + 37196 0.67 0.986091
Target:  5'- gGCcAGGGGGAGCGGcgccCCCGGGCa -3'
miRNA:   3'- -CGcUCUCUUUUGUCuaucGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 37241 0.67 0.984301
Target:  5'- -gGAGGGgcAGCAGggGGCggCAGGCGc -3'
miRNA:   3'- cgCUCUCuuUUGUCuaUCGg-GUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 37344 0.67 0.977876
Target:  5'- gGCGGGGGGAccgccgggacGACcGcgGGCCCGGGg- -3'
miRNA:   3'- -CGCUCUCUU----------UUGuCuaUCGGGUCCgc -5'
21591 5' -51.2 NC_004812.1 + 37428 0.72 0.875649
Target:  5'- aGCaGGGGggGGCGGggGGCCgAGGgGg -3'
miRNA:   3'- -CGcUCUCuuUUGUCuaUCGGgUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 38180 0.69 0.942698
Target:  5'- cGCGGGAGGGAcCcGcgGGCCC-GGCa -3'
miRNA:   3'- -CGCUCUCUUUuGuCuaUCGGGuCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.