miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 5' -51.2 NC_004812.1 + 156372 0.68 0.966538
Target:  5'- gGgGGGAgGAGAGCGGGgccgcgggGGCCgGGGCu -3'
miRNA:   3'- -CgCUCU-CUUUUGUCUa-------UCGGgUCCGc -5'
21591 5' -51.2 NC_004812.1 + 156310 0.71 0.909885
Target:  5'- cCGAGGGAGGGCGGGggacgggagggGGCCgAGGgGg -3'
miRNA:   3'- cGCUCUCUUUUGUCUa----------UCGGgUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 156190 0.69 0.959548
Target:  5'- cGCGAGAGcgccgcgcGCGGAaGGCCUgcgcgcgugggGGGCGg -3'
miRNA:   3'- -CGCUCUCuuu-----UGUCUaUCGGG-----------UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 156098 0.68 0.972629
Target:  5'- gGCGGGAGAcAGCGGGgaccggGGgCCGGGa- -3'
miRNA:   3'- -CGCUCUCUuUUGUCUa-----UCgGGUCCgc -5'
21591 5' -51.2 NC_004812.1 + 156072 0.79 0.49332
Target:  5'- gGCGGGAG---GCGGGagGGCCCGGGCGc -3'
miRNA:   3'- -CGCUCUCuuuUGUCUa-UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 156012 0.66 0.993777
Target:  5'- cGCGGGGGAGG--GGAc-GCCCGGGg- -3'
miRNA:   3'- -CGCUCUCUUUugUCUauCGGGUCCgc -5'
21591 5' -51.2 NC_004812.1 + 155881 0.74 0.761868
Target:  5'- gGCGGGGGAGgggaggGGCGGGgccggcGCCCGGGCu -3'
miRNA:   3'- -CGCUCUCUU------UUGUCUau----CGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 155559 0.72 0.860297
Target:  5'- gGCGGGGGAGGGgGGAggggcgcGCgCGGGCGg -3'
miRNA:   3'- -CGCUCUCUUUUgUCUau-----CGgGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 155445 0.74 0.771622
Target:  5'- gGCGAcGAGGGAGCGGggGGC-CGGGCu -3'
miRNA:   3'- -CGCU-CUCUUUUGUCuaUCGgGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 155286 0.67 0.986091
Target:  5'- -gGGGAGggGcggggcGCGGcggGGCCCGGGgGu -3'
miRNA:   3'- cgCUCUCuuU------UGUCua-UCGGGUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 155216 0.72 0.860297
Target:  5'- gGCGAGAGggGGCGc--GGCgCgGGGCGg -3'
miRNA:   3'- -CGCUCUCuuUUGUcuaUCG-GgUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 155026 0.7 0.91599
Target:  5'- gGCG-GGGAGccguGCGGGggGGaCCCGGGCGg -3'
miRNA:   3'- -CGCuCUCUUu---UGUCUa-UC-GGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 154950 0.7 0.91599
Target:  5'- cGCGGGGGggGGgGGAgggGGgaCGGGCGg -3'
miRNA:   3'- -CGCUCUCuuUUgUCUa--UCggGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 154860 0.69 0.942698
Target:  5'- uGCGAGGGGGcGCGGGcucgGGCCgCggAGGCGc -3'
miRNA:   3'- -CGCUCUCUUuUGUCUa---UCGG-G--UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 154742 0.71 0.903529
Target:  5'- gGCGGGGGuc-GCGGAggagcgGGCCgGGGCu -3'
miRNA:   3'- -CGCUCUCuuuUGUCUa-----UCGGgUCCGc -5'
21591 5' -51.2 NC_004812.1 + 154718 0.67 0.980202
Target:  5'- aCGGGGugccGCGGGcggGGCCCGGGCGc -3'
miRNA:   3'- cGCUCUcuuuUGUCUa--UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 154427 0.71 0.896924
Target:  5'- cGCGAGAGGGcuccAUGGGUucGGgCCGGGCGu -3'
miRNA:   3'- -CGCUCUCUUu---UGUCUA--UCgGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 154202 0.66 0.989057
Target:  5'- gGCGGG-GggGACGGGUguaggugAGUCgCGGGCc -3'
miRNA:   3'- -CGCUCuCuuUUGUCUA-------UCGG-GUCCGc -5'
21591 5' -51.2 NC_004812.1 + 153683 0.67 0.980202
Target:  5'- cCGAGGgugacGAGGACGGGgcgGGCucccCCGGGCGg -3'
miRNA:   3'- cGCUCU-----CUUUUGUCUa--UCG----GGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 153459 0.76 0.648704
Target:  5'- cGCGGGGGggGGCGGAggggAGCgC-GGCGg -3'
miRNA:   3'- -CGCUCUCuuUUGUCUa---UCGgGuCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.