miRNA display CGI


Results 21 - 40 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 5' -51.2 NC_004812.1 + 153318 0.71 0.896924
Target:  5'- uCGGGuGGAcGCGcGGUgGGCCCGGGCGg -3'
miRNA:   3'- cGCUCuCUUuUGU-CUA-UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 153135 0.71 0.890073
Target:  5'- cGCGGGGGGcucGGCGGcggGGCgCGGGCGg -3'
miRNA:   3'- -CGCUCUCUu--UUGUCua-UCGgGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 152859 0.7 0.91599
Target:  5'- gGCGGGcuGGGccuGAGCGGcgGGCCUGGGCu -3'
miRNA:   3'- -CGCUC--UCU---UUUGUCuaUCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 152712 0.66 0.98772
Target:  5'- gGCGGGGGcggccucgGAGGCGGA--GgCCGGGCGc -3'
miRNA:   3'- -CGCUCUC--------UUUUGUCUauCgGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 152649 0.66 0.990534
Target:  5'- cGCGGcGGGggGGCGccgGGCCUccgggAGGCGg -3'
miRNA:   3'- -CGCU-CUCuuUUGUcuaUCGGG-----UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 152617 0.77 0.606455
Target:  5'- aGCGGcGGcGAGAGCAGGU-GCCCGGGCc -3'
miRNA:   3'- -CGCU-CU-CUUUUGUCUAuCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 152509 0.66 0.98772
Target:  5'- gGCGccGGGGAGGACGGccccGCCgGGGCc -3'
miRNA:   3'- -CGC--UCUCUUUUGUCuau-CGGgUCCGc -5'
21591 5' -51.2 NC_004812.1 + 152020 0.69 0.955702
Target:  5'- cCGGGucGggGGCGGGUcggcgGGCCCGGGgGu -3'
miRNA:   3'- cGCUCu-CuuUUGUCUA-----UCGGGUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 151171 0.7 0.91599
Target:  5'- gGUG-GAGGAGAC----GGCCCGGGCGc -3'
miRNA:   3'- -CGCuCUCUUUUGucuaUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 150846 0.66 0.991736
Target:  5'- aGCGgacGGGGAGAGgAGAggGGCCgGaGGCGc -3'
miRNA:   3'- -CGC---UCUCUUUUgUCUa-UCGGgU-CCGC- -5'
21591 5' -51.2 NC_004812.1 + 149756 0.68 0.966538
Target:  5'- uGCGGGaAGggGAaGGA-GGCCC-GGCGg -3'
miRNA:   3'- -CGCUC-UCuuUUgUCUaUCGGGuCCGC- -5'
21591 5' -51.2 NC_004812.1 + 149540 0.7 0.921841
Target:  5'- -aGGGAGAGGGCgccuGGAgcGGCCCuGGCGc -3'
miRNA:   3'- cgCUCUCUUUUG----UCUa-UCGGGuCCGC- -5'
21591 5' -51.2 NC_004812.1 + 149437 0.67 0.986091
Target:  5'- gGCGAGAGggGACAcGU--CCCAGaCGa -3'
miRNA:   3'- -CGCUCUCuuUUGUcUAucGGGUCcGC- -5'
21591 5' -51.2 NC_004812.1 + 148989 0.74 0.771622
Target:  5'- gGCGAGGGAAGgaggguguGCGGcgGGCCgGGcGCGg -3'
miRNA:   3'- -CGCUCUCUUU--------UGUCuaUCGGgUC-CGC- -5'
21591 5' -51.2 NC_004812.1 + 148875 0.68 0.972629
Target:  5'- cGCGAGAGGAcGACGGGcgcGGaUCCcGGCGg -3'
miRNA:   3'- -CGCUCUCUU-UUGUCUa--UC-GGGuCCGC- -5'
21591 5' -51.2 NC_004812.1 + 148863 0.68 0.972629
Target:  5'- cGgGGGGGGAGGCGGGcgcccccggccUcGCCCGGcGCGg -3'
miRNA:   3'- -CgCUCUCUUUUGUCU-----------AuCGGGUC-CGC- -5'
21591 5' -51.2 NC_004812.1 + 148518 0.71 0.896924
Target:  5'- gGgGAGGGggGGCGGcgcgGGCcgCCGGGCGc -3'
miRNA:   3'- -CgCUCUCuuUUGUCua--UCG--GGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 148093 0.72 0.868086
Target:  5'- gGCGAccGGGAuaaaAGGCAGccGGCUCGGGCGg -3'
miRNA:   3'- -CGCU--CUCU----UUUGUCuaUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 147806 0.67 0.980202
Target:  5'- cCGAGAG--------UAGCCCGGGCGg -3'
miRNA:   3'- cGCUCUCuuuugucuAUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 147500 0.7 0.91599
Target:  5'- cGCGGGGGu---CcGGUGGCCCcgAGGCGc -3'
miRNA:   3'- -CGCUCUCuuuuGuCUAUCGGG--UCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.