miRNA display CGI


Results 41 - 60 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 5' -51.2 NC_004812.1 + 146990 0.66 0.992814
Target:  5'- gGCGAGGGAcuGCGGcugcgGGCUCgcuucaucguuGGGCGc -3'
miRNA:   3'- -CGCUCUCUuuUGUCua---UCGGG-----------UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 146745 0.68 0.969693
Target:  5'- -aGGGAGggGAuCAGAuaaaUAGCUacaaAGGCGa -3'
miRNA:   3'- cgCUCUCuuUU-GUCU----AUCGGg---UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 145603 0.66 0.990534
Target:  5'- cCGGGGcGAAGGCGGAcccgUGGUCCgccgGGGCGc -3'
miRNA:   3'- cGCUCU-CUUUUGUCU----AUCGGG----UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 145061 0.69 0.955702
Target:  5'- cGCGAuGGAAucCAGAgccGGCCuCGGGUGg -3'
miRNA:   3'- -CGCUcUCUUuuGUCUa--UCGG-GUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 143624 0.68 0.966538
Target:  5'- gGCGAGAGcgcGAGCGc--GGcCCCGGGCGc -3'
miRNA:   3'- -CGCUCUCu--UUUGUcuaUC-GGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 142043 0.67 0.980202
Target:  5'- aCGAGGacGAGCAGGc--CCCGGGCGa -3'
miRNA:   3'- cGCUCUcuUUUGUCUaucGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 139335 0.67 0.981718
Target:  5'- cCGAGAuuuucacGAAGGCGGAggcggucgcgugGGCCCGGGgGc -3'
miRNA:   3'- cGCUCU-------CUUUUGUCUa-----------UCGGGUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 139045 0.72 0.875649
Target:  5'- aCGAcgGAGggGACGGAggcgAGCCCAG-CGu -3'
miRNA:   3'- cGCU--CUCuuUUGUCUa---UCGGGUCcGC- -5'
21591 5' -51.2 NC_004812.1 + 138371 0.68 0.972629
Target:  5'- cGCGGGAcgggcGggGGCGcGUAcgccGCCCGGGUGg -3'
miRNA:   3'- -CGCUCU-----CuuUUGUcUAU----CGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 138082 0.67 0.986091
Target:  5'- cGCGAGcGcGAGC-GA-AGCCCuGGCGg -3'
miRNA:   3'- -CGCUCuCuUUUGuCUaUCGGGuCCGC- -5'
21591 5' -51.2 NC_004812.1 + 138001 0.7 0.934844
Target:  5'- gGgGGGGGGGAGCGGGggcGCCCcguauacaaaaggggGGGCGa -3'
miRNA:   3'- -CgCUCUCUUUUGUCUau-CGGG---------------UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 137807 0.67 0.977876
Target:  5'- gGCGAGGGcgccGCGGAgcaGGCCCccuGGCc -3'
miRNA:   3'- -CGCUCUCuuu-UGUCUa--UCGGGu--CCGc -5'
21591 5' -51.2 NC_004812.1 + 136894 0.67 0.986091
Target:  5'- -gGAGGGGGgcGACGGGUacgccguugGGCCCgAGGCc -3'
miRNA:   3'- cgCUCUCUU--UUGUCUA---------UCGGG-UCCGc -5'
21591 5' -51.2 NC_004812.1 + 134679 0.67 0.982341
Target:  5'- cGCGAGgaGGggGGCGGAgccgccgAGCCgCcGGCu -3'
miRNA:   3'- -CGCUC--UCuuUUGUCUa------UCGG-GuCCGc -5'
21591 5' -51.2 NC_004812.1 + 134277 0.66 0.990534
Target:  5'- cCGAGucuaGGGGAAcCAGGUccAGCCCcGGCGc -3'
miRNA:   3'- cGCUC----UCUUUU-GUCUA--UCGGGuCCGC- -5'
21591 5' -51.2 NC_004812.1 + 132972 0.67 0.977876
Target:  5'- gGCGAGGGucacGCGGAc-GCCCgucuGGGCGc -3'
miRNA:   3'- -CGCUCUCuuu-UGUCUauCGGG----UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 130487 0.66 0.992814
Target:  5'- gGCGAGgcGGggGGCGacgGGUCCGGGUc -3'
miRNA:   3'- -CGCUC--UCuuUUGUcuaUCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 128740 0.66 0.993777
Target:  5'- gGCGGccGAAGGCgcggccGGAgccgGGCUCGGGCGg -3'
miRNA:   3'- -CGCUcuCUUUUG------UCUa---UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 128565 0.7 0.925785
Target:  5'- gGCGAGcAGGAAGgAGAggccgccgcgcgcgUcGGUCCAGGCGg -3'
miRNA:   3'- -CGCUC-UCUUUUgUCU--------------A-UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 128500 0.68 0.969693
Target:  5'- gGCGGGccGGucCAGuugccGGCCCAGGCGg -3'
miRNA:   3'- -CGCUCucUUuuGUCua---UCGGGUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.