miRNA display CGI


Results 61 - 80 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 5' -51.2 NC_004812.1 + 127569 0.66 0.990908
Target:  5'- cGCGGGGGAGGgggcgcgccccccGCgucuaccaguccucgGGGcGGCCCGGGCc -3'
miRNA:   3'- -CGCUCUCUUU-------------UG---------------UCUaUCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 127492 0.68 0.963159
Target:  5'- gGgGGGAGggGugGGcgGGuCCCGccGGCGg -3'
miRNA:   3'- -CgCUCUCuuUugUCuaUC-GGGU--CCGC- -5'
21591 5' -51.2 NC_004812.1 + 125714 0.67 0.986091
Target:  5'- cCGGGGGAGGGCccGGGUcgcgcAGCCCcGGCc -3'
miRNA:   3'- cGCUCUCUUUUG--UCUA-----UCGGGuCCGc -5'
21591 5' -51.2 NC_004812.1 + 125289 0.69 0.959548
Target:  5'- cGCGAGAGcgccgcgcGCGGAaGGCCUgcgcgcgugggGGGCGg -3'
miRNA:   3'- -CGCUCUCuuu-----UGUCUaUCGGG-----------UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 125171 0.79 0.49332
Target:  5'- gGCGGGAG---GCGGGagGGCCCGGGCGc -3'
miRNA:   3'- -CGCUCUCuuuUGUCUa-UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 124315 0.72 0.860297
Target:  5'- gGCGAGAGggGGCGc--GGCgCgGGGCGg -3'
miRNA:   3'- -CGCUCUCuuUUGUcuaUCG-GgUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 123817 0.67 0.980202
Target:  5'- aCGGGGugccGCGGGcggGGCCCGGGCGc -3'
miRNA:   3'- cGCUCUcuuuUGUCUa--UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 123526 0.71 0.896924
Target:  5'- cGCGAGAGGGcuccAUGGGUucGGgCCGGGCGu -3'
miRNA:   3'- -CGCUCUCUUu---UGUCUA--UCgGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 123301 0.66 0.989057
Target:  5'- gGCGGG-GggGACGGGUguaggugAGUCgCGGGCc -3'
miRNA:   3'- -CGCUCuCuuUUGUCUA-------UCGG-GUCCGc -5'
21591 5' -51.2 NC_004812.1 + 122752 0.71 0.909885
Target:  5'- gGCGGGAGAGGGCGcgcacGGUGcGCCCgccgaGGGUGa -3'
miRNA:   3'- -CGCUCUCUUUUGU-----CUAU-CGGG-----UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 122558 0.76 0.648704
Target:  5'- cGCGGGGGggGGCGGAggggAGCgC-GGCGg -3'
miRNA:   3'- -CGCUCUCuuUUGUCUa---UCGgGuCCGC- -5'
21591 5' -51.2 NC_004812.1 + 122417 0.71 0.896924
Target:  5'- uCGGGuGGAcGCGcGGUgGGCCCGGGCGg -3'
miRNA:   3'- cGCUCuCUUuUGU-CUA-UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 122234 0.71 0.890073
Target:  5'- cGCGGGGGGcucGGCGGcggGGCgCGGGCGg -3'
miRNA:   3'- -CGCUCUCUu--UUGUCua-UCGgGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 121958 0.7 0.91599
Target:  5'- gGCGGGcuGGGccuGAGCGGcgGGCCUGGGCu -3'
miRNA:   3'- -CGCUC--UCU---UUUGUCuaUCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 121944 0.68 0.965548
Target:  5'- aGCuGGGGGAcGCGcuggcccuggcgccGGUGGCCCGGGUGu -3'
miRNA:   3'- -CGcUCUCUUuUGU--------------CUAUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 121811 0.66 0.98772
Target:  5'- gGCGGGGGcggccucgGAGGCGGA--GgCCGGGCGc -3'
miRNA:   3'- -CGCUCUC--------UUUUGUCUauCgGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 121716 0.77 0.606455
Target:  5'- aGCGGcGGcGAGAGCAGGU-GCCCGGGCc -3'
miRNA:   3'- -CGCU-CU-CUUUUGUCUAuCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 121119 0.69 0.955702
Target:  5'- cCGGGucGggGGCGGGUcggcgGGCCCGGGgGu -3'
miRNA:   3'- cGCUCu-CuuUUGUCUA-----UCGGGUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 118639 0.7 0.921841
Target:  5'- -aGGGAGAGGGCgccuGGAgcGGCCCuGGCGc -3'
miRNA:   3'- cgCUCUCUUUUG----UCUa-UCGGGuCCGC- -5'
21591 5' -51.2 NC_004812.1 + 118536 0.67 0.986091
Target:  5'- gGCGAGAGggGACAcGU--CCCAGaCGa -3'
miRNA:   3'- -CGCUCUCuuUUGUcUAucGGGUCcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.