miRNA display CGI


Results 81 - 100 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 5' -51.2 NC_004812.1 + 117962 0.68 0.972629
Target:  5'- cGgGGGGGGAGGCGGGcgcccccggccUcGCCCGGcGCGg -3'
miRNA:   3'- -CgCUCUCUUUUGUCU-----------AuCGGGUC-CGC- -5'
21591 5' -51.2 NC_004812.1 + 117617 0.71 0.896924
Target:  5'- gGgGAGGGggGGCGGcgcgGGCcgCCGGGCGc -3'
miRNA:   3'- -CgCUCUCuuUUGUCua--UCG--GGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 117192 0.72 0.868086
Target:  5'- gGCGAccGGGAuaaaAGGCAGccGGCUCGGGCGg -3'
miRNA:   3'- -CGCU--CUCU----UUUGUCuaUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 116905 0.67 0.980202
Target:  5'- cCGAGAG--------UAGCCCGGGCGg -3'
miRNA:   3'- cGCUCUCuuuugucuAUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 114986 0.67 0.982341
Target:  5'- gGCGuAGAGAAAACAacguuuaauGUAGaaaagacacCCCGGGCGg -3'
miRNA:   3'- -CGC-UCUCUUUUGUc--------UAUC---------GGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 113832 0.68 0.975354
Target:  5'- -gGAGAGAAGAUGGAcuuuuacguGCCC-GGCGc -3'
miRNA:   3'- cgCUCUCUUUUGUCUau-------CGGGuCCGC- -5'
21591 5' -51.2 NC_004812.1 + 113260 0.66 0.992814
Target:  5'- aGCGAGAGcuucgcccGCAGc--GCCguGGCGa -3'
miRNA:   3'- -CGCUCUCuuu-----UGUCuauCGGguCCGC- -5'
21591 5' -51.2 NC_004812.1 + 112895 0.66 0.98772
Target:  5'- gGCGAGAcGAcggcGACGGAgcGCCCucgccgcgaAGGCa -3'
miRNA:   3'- -CGCUCU-CUu---UUGUCUauCGGG---------UCCGc -5'
21591 5' -51.2 NC_004812.1 + 112712 0.7 0.932778
Target:  5'- gGCG-GAGAGGGCGGccGGCcgcggCCGGGCGc -3'
miRNA:   3'- -CGCuCUCUUUUGUCuaUCG-----GGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 111022 0.72 0.844068
Target:  5'- aGCGGGAGcacuACuGGGUcGCCCAGGCc -3'
miRNA:   3'- -CGCUCUCuuu-UG-UCUAuCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 110735 0.66 0.989198
Target:  5'- gGCGGGAGAcccucGCGGA-GGUCUugGGGCGu -3'
miRNA:   3'- -CGCUCUCUuu---UGUCUaUCGGG--UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 110640 0.68 0.966211
Target:  5'- cGCGGGGGAGcuGCGcGUgcugcacAGCCUGGGCGg -3'
miRNA:   3'- -CGCUCUCUUu-UGUcUA-------UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 110118 0.67 0.97714
Target:  5'- cGCGGGAGAAAACGcGUGGgaggacgacgacgaCCCGGacGCGg -3'
miRNA:   3'- -CGCUCUCUUUUGUcUAUC--------------GGGUC--CGC- -5'
21591 5' -51.2 NC_004812.1 + 109449 0.66 0.989057
Target:  5'- cCGAGGGAGAgggcggcGCGGGggcGCCCgcGGGCu -3'
miRNA:   3'- cGCUCUCUUU-------UGUCUau-CGGG--UCCGc -5'
21591 5' -51.2 NC_004812.1 + 109396 0.67 0.977633
Target:  5'- gGCG-GAGcgGcuguuggucccccACGGGUGGCCC-GGCGg -3'
miRNA:   3'- -CGCuCUCuuU-------------UGUCUAUCGGGuCCGC- -5'
21591 5' -51.2 NC_004812.1 + 109179 0.66 0.991389
Target:  5'- uGCGAGAcaaacagcagcaccGGAcACAGGUAgaugguacgguGCCCcGGCGg -3'
miRNA:   3'- -CGCUCU--------------CUUuUGUCUAU-----------CGGGuCCGC- -5'
21591 5' -51.2 NC_004812.1 + 108546 0.76 0.638141
Target:  5'- uCGGGGGGAAACucggggguGAUgaaGGCCCGGGCGu -3'
miRNA:   3'- cGCUCUCUUUUGu-------CUA---UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 107969 0.66 0.98772
Target:  5'- cGCGGGAucGGAUAGAgAGgCgGGGCGu -3'
miRNA:   3'- -CGCUCUcuUUUGUCUaUCgGgUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 107802 0.72 0.844068
Target:  5'- aGCGuGAuGggGGCGGGUAGCa-GGGCGu -3'
miRNA:   3'- -CGCuCU-CuuUUGUCUAUCGggUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 107392 0.67 0.984112
Target:  5'- gGUGAGGGGGccgccgccgaaacGGCGGGUGcGgCCAGGCc -3'
miRNA:   3'- -CGCUCUCUU-------------UUGUCUAU-CgGGUCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.