Results 1 - 20 of 318 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21591 | 5' | -51.2 | NC_004812.1 | + | 30802 | 0.72 | 0.849845 |
Target: 5'- cGCGGGccgagggccccacgGGggGGCAGGgcGGCgCCAGGCGc -3' miRNA: 3'- -CGCUC--------------UCuuUUGUCUa-UCG-GGUCCGC- -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 5730 | 0.74 | 0.761868 |
Target: 5'- cGCGGGAGGAGGgcgcCGGGcgccGCCCAGGCc -3' miRNA: 3'- -CGCUCUCUUUU----GUCUau--CGGGUCCGc -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 155881 | 0.74 | 0.761868 |
Target: 5'- gGCGGGGGAGgggaggGGCGGGgccggcGCCCGGGCu -3' miRNA: 3'- -CGCUCUCUU------UUGUCUau----CGGGUCCGc -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 148989 | 0.74 | 0.771622 |
Target: 5'- gGCGAGGGAAGgaggguguGCGGcgGGCCgGGcGCGg -3' miRNA: 3'- -CGCUCUCUUU--------UGUCuaUCGGgUC-CGC- -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 155445 | 0.74 | 0.771622 |
Target: 5'- gGCGAcGAGGGAGCGGggGGC-CGGGCu -3' miRNA: 3'- -CGCU-CUCUUUUGUCuaUCGgGUCCGc -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 32830 | 0.74 | 0.781243 |
Target: 5'- aCGAGuGggGGCGGGgggcGGCCCccaGGGCGg -3' miRNA: 3'- cGCUCuCuuUUGUCUa---UCGGG---UCCGC- -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 32896 | 0.73 | 0.835642 |
Target: 5'- cCGAGAugauGAGGuggauCAGcgAGCCCGGGCGu -3' miRNA: 3'- cGCUCU----CUUUu----GUCuaUCGGGUCCGC- -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 107802 | 0.72 | 0.844068 |
Target: 5'- aGCGuGAuGggGGCGGGUAGCa-GGGCGu -3' miRNA: 3'- -CGCuCU-CuuUUGUCUAUCGggUCCGC- -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 65980 | 0.72 | 0.844068 |
Target: 5'- cGUGGGccacGAAGCGG-UAGCCCGGGCa -3' miRNA: 3'- -CGCUCuc--UUUUGUCuAUCGGGUCCGc -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 44531 | 0.74 | 0.751992 |
Target: 5'- -aGaAGAGggGugGGcGUGGCCCGGGCu -3' miRNA: 3'- cgC-UCUCuuUugUC-UAUCGGGUCCGc -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 56869 | 0.75 | 0.701125 |
Target: 5'- cCGAGAGggGgguCAGAacGCCCGGGCc -3' miRNA: 3'- cGCUCUCuuUu--GUCUauCGGGUCCGc -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 77472 | 0.76 | 0.680274 |
Target: 5'- gGCGAGcGGAGGCGGGgcugGGaCCCGGGCc -3' miRNA: 3'- -CGCUCuCUUUUGUCUa---UC-GGGUCCGc -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 6146 | 0.84 | 0.296102 |
Target: 5'- gGCGAGGGGAAGgGGGUcgggGGCCUGGGCGg -3' miRNA: 3'- -CGCUCUCUUUUgUCUA----UCGGGUCCGC- -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 125171 | 0.79 | 0.49332 |
Target: 5'- gGCGGGAG---GCGGGagGGCCCGGGCGc -3' miRNA: 3'- -CGCUCUCuuuUGUCUa-UCGGGUCCGC- -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 121716 | 0.77 | 0.606455 |
Target: 5'- aGCGGcGGcGAGAGCAGGU-GCCCGGGCc -3' miRNA: 3'- -CGCU-CU-CUUUUGUCUAuCGGGUCCGc -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 38568 | 0.77 | 0.606455 |
Target: 5'- cGCGGGGGGAAgauccGCGGGUccgccuGGCCCGGcGCGg -3' miRNA: 3'- -CGCUCUCUUU-----UGUCUA------UCGGGUC-CGC- -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 71885 | 0.77 | 0.627572 |
Target: 5'- gGUGAGAGAGccGACGGcgGG-CCGGGCGg -3' miRNA: 3'- -CGCUCUCUU--UUGUCuaUCgGGUCCGC- -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 48118 | 0.76 | 0.648704 |
Target: 5'- cGCGGGAGAcggcggagGAGCGGGUGGCCguccucgAGGCGc -3' miRNA: 3'- -CGCUCUCU--------UUUGUCUAUCGGg------UCCGC- -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 122558 | 0.76 | 0.648704 |
Target: 5'- cGCGGGGGggGGCGGAggggAGCgC-GGCGg -3' miRNA: 3'- -CGCUCUCuuUUGUCUa---UCGgGuCCGC- -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 32676 | 0.76 | 0.659254 |
Target: 5'- cGCGGGAGGAGGCcGGgccGGCCCGGGa- -3' miRNA: 3'- -CGCUCUCUUUUGuCUa--UCGGGUCCgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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