miRNA display CGI


Results 41 - 60 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 5' -51.2 NC_004812.1 + 71885 0.77 0.627572
Target:  5'- gGUGAGAGAGccGACGGcgGG-CCGGGCGg -3'
miRNA:   3'- -CGCUCUCUU--UUGUCuaUCgGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 38568 0.77 0.606455
Target:  5'- cGCGGGGGGAAgauccGCGGGUccgccuGGCCCGGcGCGg -3'
miRNA:   3'- -CGCUCUCUUU-----UGUCUA------UCGGGUC-CGC- -5'
21591 5' -51.2 NC_004812.1 + 121716 0.77 0.606455
Target:  5'- aGCGGcGGcGAGAGCAGGU-GCCCGGGCc -3'
miRNA:   3'- -CGCU-CU-CUUUUGUCUAuCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 125171 0.79 0.49332
Target:  5'- gGCGGGAG---GCGGGagGGCCCGGGCGc -3'
miRNA:   3'- -CGCUCUCuuuUGUCUa-UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 6146 0.84 0.296102
Target:  5'- gGCGAGGGGAAGgGGGUcgggGGCCUGGGCGg -3'
miRNA:   3'- -CGCUCUCUUUUgUCUA----UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 148989 0.74 0.771622
Target:  5'- gGCGAGGGAAGgaggguguGCGGcgGGCCgGGcGCGg -3'
miRNA:   3'- -CGCUCUCUUU--------UGUCuaUCGGgUC-CGC- -5'
21591 5' -51.2 NC_004812.1 + 155445 0.74 0.771622
Target:  5'- gGCGAcGAGGGAGCGGggGGC-CGGGCu -3'
miRNA:   3'- -CGCU-CUCUUUUGUCuaUCGgGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 14555 0.72 0.875649
Target:  5'- cGCGaAGGGAAAcucccGCAGGggcaGGCCCgcGGGCGu -3'
miRNA:   3'- -CGC-UCUCUUU-----UGUCUa---UCGGG--UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 100127 0.72 0.875649
Target:  5'- gGgGAGGGGAGGCGuGGcGGCgCGGGCGg -3'
miRNA:   3'- -CgCUCUCUUUUGU-CUaUCGgGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 6527 0.72 0.875649
Target:  5'- aGCaGGGGggGGCGGggGGCCgAGGgGg -3'
miRNA:   3'- -CGcUCUCuuUUGUCuaUCGGgUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 117192 0.72 0.868086
Target:  5'- gGCGAccGGGAuaaaAGGCAGccGGCUCGGGCGg -3'
miRNA:   3'- -CGCU--CUCU----UUUGUCuaUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 155559 0.72 0.860297
Target:  5'- gGCGGGGGAGGGgGGAggggcgcGCgCGGGCGg -3'
miRNA:   3'- -CGCUCUCUUUUgUCUau-----CGgGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 124315 0.72 0.860297
Target:  5'- gGCGAGAGggGGCGc--GGCgCgGGGCGg -3'
miRNA:   3'- -CGCUCUCuuUUGUcuaUCG-GgUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 4745 0.72 0.860297
Target:  5'- cCGGGAGGAGACAGAgagagaGGCggagaCGGGCGc -3'
miRNA:   3'- cGCUCUCUUUUGUCUa-----UCGg----GUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 27725 0.72 0.852289
Target:  5'- aCGAGGGggGGCGGggGGCCgCGGucaGCGg -3'
miRNA:   3'- cGCUCUCuuUUGUCuaUCGG-GUC---CGC- -5'
21591 5' -51.2 NC_004812.1 + 30802 0.72 0.849845
Target:  5'- cGCGGGccgagggccccacgGGggGGCAGGgcGGCgCCAGGCGc -3'
miRNA:   3'- -CGCUC--------------UCuuUUGUCUa-UCG-GGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 65980 0.72 0.844068
Target:  5'- cGUGGGccacGAAGCGG-UAGCCCGGGCa -3'
miRNA:   3'- -CGCUCuc--UUUUGUCuAUCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 107802 0.72 0.844068
Target:  5'- aGCGuGAuGggGGCGGGUAGCa-GGGCGu -3'
miRNA:   3'- -CGCuCU-CuuUUGUCUAUCGggUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 32896 0.73 0.835642
Target:  5'- cCGAGAugauGAGGuggauCAGcgAGCCCGGGCGu -3'
miRNA:   3'- cGCUCU----CUUUu----GUCuaUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 32830 0.74 0.781243
Target:  5'- aCGAGuGggGGCGGGgggcGGCCCccaGGGCGg -3'
miRNA:   3'- cGCUCuCuuUUGUCUa---UCGGG---UCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.