miRNA display CGI


Results 61 - 80 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 5' -51.2 NC_004812.1 + 65980 0.72 0.844068
Target:  5'- cGUGGGccacGAAGCGG-UAGCCCGGGCa -3'
miRNA:   3'- -CGCUCuc--UUUUGUCuAUCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 30802 0.72 0.849845
Target:  5'- cGCGGGccgagggccccacgGGggGGCAGGgcGGCgCCAGGCGc -3'
miRNA:   3'- -CGCUC--------------UCuuUUGUCUa-UCG-GGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 88097 0.71 0.882979
Target:  5'- -gGAG-GAGAACGGGUucGgCCAGGCGa -3'
miRNA:   3'- cgCUCuCUUUUGUCUAu-CgGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 63161 0.71 0.890073
Target:  5'- aGCGGGAGAGGGgcGAccuGCCCGGGUa -3'
miRNA:   3'- -CGCUCUCUUUUguCUau-CGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 35630 0.71 0.890073
Target:  5'- cGCGGGGGAGGGuuGAcguGCCgCGGGCGc -3'
miRNA:   3'- -CGCUCUCUUUUguCUau-CGG-GUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 122234 0.71 0.890073
Target:  5'- cGCGGGGGGcucGGCGGcggGGCgCGGGCGg -3'
miRNA:   3'- -CGCUCUCUu--UUGUCua-UCGgGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 117617 0.71 0.896924
Target:  5'- gGgGAGGGggGGCGGcgcgGGCcgCCGGGCGc -3'
miRNA:   3'- -CgCUCUCuuUUGUCua--UCG--GGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 122417 0.71 0.896924
Target:  5'- uCGGGuGGAcGCGcGGUgGGCCCGGGCGg -3'
miRNA:   3'- cGCUCuCUUuUGU-CUA-UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 123526 0.71 0.896924
Target:  5'- cGCGAGAGGGcuccAUGGGUucGGgCCGGGCGu -3'
miRNA:   3'- -CGCUCUCUUu---UGUCUA--UCgGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 15332 0.71 0.903529
Target:  5'- cGCGAGGGGGAAguGAcgcagcGCCUggAGGCGu -3'
miRNA:   3'- -CGCUCUCUUUUguCUau----CGGG--UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 105468 0.71 0.882979
Target:  5'- aGCGAGgacggggagcGGAGGACGGAgcaggcgaccgGGCCC-GGCGg -3'
miRNA:   3'- -CGCUC----------UCUUUUGUCUa----------UCGGGuCCGC- -5'
21591 5' -51.2 NC_004812.1 + 139045 0.72 0.875649
Target:  5'- aCGAcgGAGggGACGGAggcgAGCCCAG-CGu -3'
miRNA:   3'- cGCU--CUCuuUUGUCUa---UCGGGUCcGC- -5'
21591 5' -51.2 NC_004812.1 + 27725 0.72 0.852289
Target:  5'- aCGAGGGggGGCGGggGGCCgCGGucaGCGg -3'
miRNA:   3'- cGCUCUCuuUUGUCuaUCGG-GUC---CGC- -5'
21591 5' -51.2 NC_004812.1 + 4745 0.72 0.860297
Target:  5'- cCGGGAGGAGACAGAgagagaGGCggagaCGGGCGc -3'
miRNA:   3'- cGCUCUCUUUUGUCUa-----UCGg----GUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 124315 0.72 0.860297
Target:  5'- gGCGAGAGggGGCGc--GGCgCgGGGCGg -3'
miRNA:   3'- -CGCUCUCuuUUGUcuaUCG-GgUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 155559 0.72 0.860297
Target:  5'- gGCGGGGGAGGGgGGAggggcgcGCgCGGGCGg -3'
miRNA:   3'- -CGCUCUCUUUUgUCUau-----CGgGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 117192 0.72 0.868086
Target:  5'- gGCGAccGGGAuaaaAGGCAGccGGCUCGGGCGg -3'
miRNA:   3'- -CGCU--CUCU----UUUGUCuaUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 6527 0.72 0.875649
Target:  5'- aGCaGGGGggGGCGGggGGCCgAGGgGg -3'
miRNA:   3'- -CGcUCUCuuUUGUCuaUCGGgUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 100127 0.72 0.875649
Target:  5'- gGgGAGGGGAGGCGuGGcGGCgCGGGCGg -3'
miRNA:   3'- -CgCUCUCUUUUGU-CUaUCGgGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 14555 0.72 0.875649
Target:  5'- cGCGaAGGGAAAcucccGCAGGggcaGGCCCgcGGGCGu -3'
miRNA:   3'- -CGC-UCUCUUU-----UGUCUa---UCGGG--UCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.