Results 81 - 100 of 318 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21591 | 5' | -51.2 | NC_004812.1 | + | 121958 | 0.7 | 0.91599 |
Target: 5'- gGCGGGcuGGGccuGAGCGGcgGGCCUGGGCu -3' miRNA: 3'- -CGCUC--UCU---UUUGUCuaUCGGGUCCGc -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 151171 | 0.7 | 0.91599 |
Target: 5'- gGUG-GAGGAGAC----GGCCCGGGCGc -3' miRNA: 3'- -CGCuCUCUUUUGucuaUCGGGUCCGC- -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 155026 | 0.7 | 0.91599 |
Target: 5'- gGCG-GGGAGccguGCGGGggGGaCCCGGGCGg -3' miRNA: 3'- -CGCuCUCUUu---UGUCUa-UC-GGGUCCGC- -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 5070 | 0.7 | 0.91599 |
Target: 5'- gGCGGGAGAcu-CGGggGGCCgGGGUc -3' miRNA: 3'- -CGCUCUCUuuuGUCuaUCGGgUCCGc -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 27794 | 0.7 | 0.91599 |
Target: 5'- cGgGGGAGAGGGCGG--GGCCgGGGgGg -3' miRNA: 3'- -CgCUCUCUUUUGUCuaUCGGgUCCgC- -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 147500 | 0.7 | 0.91599 |
Target: 5'- cGCGGGGGu---CcGGUGGCCCcgAGGCGc -3' miRNA: 3'- -CGCUCUCuuuuGuCUAUCGGG--UCCGC- -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 154950 | 0.7 | 0.91599 |
Target: 5'- cGCGGGGGggGGgGGAgggGGgaCGGGCGg -3' miRNA: 3'- -CGCUCUCuuUUgUCUa--UCggGUCCGC- -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 15332 | 0.71 | 0.903529 |
Target: 5'- cGCGAGGGGGAAguGAcgcagcGCCUggAGGCGu -3' miRNA: 3'- -CGCUCUCUUUUguCUau----CGGG--UCCGC- -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 123526 | 0.71 | 0.896924 |
Target: 5'- cGCGAGAGGGcuccAUGGGUucGGgCCGGGCGu -3' miRNA: 3'- -CGCUCUCUUu---UGUCUA--UCgGGUCCGC- -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 122417 | 0.71 | 0.896924 |
Target: 5'- uCGGGuGGAcGCGcGGUgGGCCCGGGCGg -3' miRNA: 3'- cGCUCuCUUuUGU-CUA-UCGGGUCCGC- -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 100127 | 0.72 | 0.875649 |
Target: 5'- gGgGAGGGGAGGCGuGGcGGCgCGGGCGg -3' miRNA: 3'- -CgCUCUCUUUUGU-CUaUCGgGUCCGC- -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 14555 | 0.72 | 0.875649 |
Target: 5'- cGCGaAGGGAAAcucccGCAGGggcaGGCCCgcGGGCGu -3' miRNA: 3'- -CGC-UCUCUUU-----UGUCUa---UCGGG--UCCGC- -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 139045 | 0.72 | 0.875649 |
Target: 5'- aCGAcgGAGggGACGGAggcgAGCCCAG-CGu -3' miRNA: 3'- cGCU--CUCuuUUGUCUa---UCGGGUCcGC- -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 105468 | 0.71 | 0.882979 |
Target: 5'- aGCGAGgacggggagcGGAGGACGGAgcaggcgaccgGGCCC-GGCGg -3' miRNA: 3'- -CGCUC----------UCUUUUGUCUa----------UCGGGuCCGC- -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 88097 | 0.71 | 0.882979 |
Target: 5'- -gGAG-GAGAACGGGUucGgCCAGGCGa -3' miRNA: 3'- cgCUCuCUUUUGUCUAu-CgGGUCCGC- -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 63161 | 0.71 | 0.890073 |
Target: 5'- aGCGGGAGAGGGgcGAccuGCCCGGGUa -3' miRNA: 3'- -CGCUCUCUUUUguCUau-CGGGUCCGc -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 35630 | 0.71 | 0.890073 |
Target: 5'- cGCGGGGGAGGGuuGAcguGCCgCGGGCGc -3' miRNA: 3'- -CGCUCUCUUUUguCUau-CGG-GUCCGC- -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 122234 | 0.71 | 0.890073 |
Target: 5'- cGCGGGGGGcucGGCGGcggGGCgCGGGCGg -3' miRNA: 3'- -CGCUCUCUu--UUGUCua-UCGgGUCCGC- -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 117617 | 0.71 | 0.896924 |
Target: 5'- gGgGAGGGggGGCGGcgcgGGCcgCCGGGCGc -3' miRNA: 3'- -CgCUCUCuuUUGUCua--UCG--GGUCCGC- -5' |
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21591 | 5' | -51.2 | NC_004812.1 | + | 4783 | 0.7 | 0.921841 |
Target: 5'- uGgGGGAGggGGCGGGgcgagggcUGGUgCGGGCGc -3' miRNA: 3'- -CgCUCUCuuUUGUCU--------AUCGgGUCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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