miRNA display CGI


Results 21 - 40 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 5' -51.2 NC_004812.1 + 16830 0.72 0.860297
Target:  5'- cGCGGGgucGGGGggUAGGggugggAGUCCGGGCGg -3'
miRNA:   3'- -CGCUC---UCUUuuGUCUa-----UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 40532 0.72 0.852289
Target:  5'- cGCGGGGGAGGGgAGggGGCgCGGGgGa -3'
miRNA:   3'- -CGCUCUCUUUUgUCuaUCGgGUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 59697 0.75 0.721728
Target:  5'- cGCGAGGGAGAGCGGcggcgAGCggCgAGGCGg -3'
miRNA:   3'- -CGCUCUCUUUUGUCua---UCG--GgUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 61893 0.78 0.533581
Target:  5'- gGCGAGGGGGAucCAGAUGuGCUCGGGCc -3'
miRNA:   3'- -CGCUCUCUUUu-GUCUAU-CGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 153135 0.71 0.890073
Target:  5'- cGCGGGGGGcucGGCGGcggGGCgCGGGCGg -3'
miRNA:   3'- -CGCUCUCUu--UUGUCua-UCGgGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 29937 0.72 0.868086
Target:  5'- gGCGcGAGGGAGCGGggGGC-CGGGCu -3'
miRNA:   3'- -CGCuCUCUUUUGUCuaUCGgGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 16083 0.73 0.827018
Target:  5'- aCGGGAGGAAACGGGccuggAGUCuCGGGCa -3'
miRNA:   3'- cGCUCUCUUUUGUCUa----UCGG-GUCCGc -5'
21591 5' -51.2 NC_004812.1 + 156072 0.79 0.49332
Target:  5'- gGCGGGAG---GCGGGagGGCCCGGGCGc -3'
miRNA:   3'- -CGCUCUCuuuUGUCUa-UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 155216 0.72 0.860297
Target:  5'- gGCGAGAGggGGCGc--GGCgCgGGGCGg -3'
miRNA:   3'- -CGCUCUCuuUUGUcuaUCG-GgUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 17941 0.82 0.365379
Target:  5'- gGgGGGGGAGAGgGGGUcGCCCGGGCGa -3'
miRNA:   3'- -CgCUCUCUUUUgUCUAuCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 111022 0.72 0.844068
Target:  5'- aGCGGGAGcacuACuGGGUcGCCCAGGCc -3'
miRNA:   3'- -CGCUCUCuuu-UG-UCUAuCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 30050 0.72 0.860297
Target:  5'- gGCGGGGGAGGGgGGAggggcgcGCgCGGGCGg -3'
miRNA:   3'- -CGCUCUCUUUUgUCUau-----CGgGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 36631 0.74 0.761868
Target:  5'- cGCGGGAGGAGGgcgcCGGGcgccGCCCAGGCc -3'
miRNA:   3'- -CGCUCUCUUUU----GUCUau--CGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 20125 0.74 0.742003
Target:  5'- cGCGcGGGGGAGCGGAccgGGCCCcGGCc -3'
miRNA:   3'- -CGCuCUCUUUUGUCUa--UCGGGuCCGc -5'
21591 5' -51.2 NC_004812.1 + 153459 0.76 0.648704
Target:  5'- cGCGGGGGggGGCGGAggggAGCgC-GGCGg -3'
miRNA:   3'- -CGCUCUCuuUUGUCUa---UCGgGuCCGC- -5'
21591 5' -51.2 NC_004812.1 + 16770 0.78 0.543835
Target:  5'- cGCGGGGGccgGAGGguGAgggGGCCCAGGUGg -3'
miRNA:   3'- -CGCUCUC---UUUUguCUa--UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 29234 0.71 0.903529
Target:  5'- gGCGGGGGuc-GCGGAggagcgGGCCgGGGCu -3'
miRNA:   3'- -CGCUCUCuuuUGUCUa-----UCGGgUCCGc -5'
21591 5' -51.2 NC_004812.1 + 148518 0.71 0.896924
Target:  5'- gGgGAGGGggGGCGGcgcgGGCcgCCGGGCGc -3'
miRNA:   3'- -CgCUCUCuuUUGUCua--UCG--GGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 37428 0.72 0.875649
Target:  5'- aGCaGGGGggGGCGGggGGCCgAGGgGg -3'
miRNA:   3'- -CGcUCUCuuUUGUCuaUCGGgUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 105276 0.72 0.868086
Target:  5'- gGCGAcuccGAGGGCGGGccUGGCCUGGGCGu -3'
miRNA:   3'- -CGCUcu--CUUUUGUCU--AUCGGGUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.