Results 41 - 60 of 318 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21591 | 5' | -51.2 | NC_004812.1 | + | 52278 | 0.71 | 0.890073 |
Target: 5'- gGCGGGGGAuGGGCGGAgaaggucacggGGCCCGgccGGCGu -3' miRNA: 3'- -CGCUCUCU-UUUGUCUa----------UCGGGU---CCGC- -5' |
|||||||
21591 | 5' | -51.2 | NC_004812.1 | + | 16083 | 0.73 | 0.827018 |
Target: 5'- aCGGGAGGAAACGGGccuggAGUCuCGGGCa -3' miRNA: 3'- cGCUCUCUUUUGUCUa----UCGG-GUCCGc -5' |
|||||||
21591 | 5' | -51.2 | NC_004812.1 | + | 156072 | 0.79 | 0.49332 |
Target: 5'- gGCGGGAG---GCGGGagGGCCCGGGCGc -3' miRNA: 3'- -CGCUCUCuuuUGUCUa-UCGGGUCCGC- -5' |
|||||||
21591 | 5' | -51.2 | NC_004812.1 | + | 54578 | 0.71 | 0.882979 |
Target: 5'- cGCGGGAGAcggAGGCGGAcgAGCCacccucgcGGCGg -3' miRNA: 3'- -CGCUCUCU---UUUGUCUa-UCGGgu------CCGC- -5' |
|||||||
21591 | 5' | -51.2 | NC_004812.1 | + | 17941 | 0.82 | 0.365379 |
Target: 5'- gGgGGGGGAGAGgGGGUcGCCCGGGCGa -3' miRNA: 3'- -CgCUCUCUUUUgUCUAuCGGGUCCGC- -5' |
|||||||
21591 | 5' | -51.2 | NC_004812.1 | + | 94419 | 0.7 | 0.921841 |
Target: 5'- cCGGGGGGccGAAUcGGUGGCgCGGGCGg -3' miRNA: 3'- cGCUCUCU--UUUGuCUAUCGgGUCCGC- -5' |
|||||||
21591 | 5' | -51.2 | NC_004812.1 | + | 16770 | 0.78 | 0.543835 |
Target: 5'- cGCGGGGGccgGAGGguGAgggGGCCCAGGUGg -3' miRNA: 3'- -CGCUCUC---UUUUguCUa--UCGGGUCCGC- -5' |
|||||||
21591 | 5' | -51.2 | NC_004812.1 | + | 17604 | 0.7 | 0.921841 |
Target: 5'- uGCGGGcGA----GGcgGGCCCGGGCGa -3' miRNA: 3'- -CGCUCuCUuuugUCuaUCGGGUCCGC- -5' |
|||||||
21591 | 5' | -51.2 | NC_004812.1 | + | 40609 | 0.7 | 0.91599 |
Target: 5'- cGCGGGGGAGGGgAGGggGGCgCGGGgGa -3' miRNA: 3'- -CGCUCUCUUUUgUCUa-UCGgGUCCgC- -5' |
|||||||
21591 | 5' | -51.2 | NC_004812.1 | + | 29518 | 0.7 | 0.91599 |
Target: 5'- gGCG-GGGAGccguGCGGGggGGaCCCGGGCGg -3' miRNA: 3'- -CGCuCUCUUu---UGUCUa-UC-GGGUCCGC- -5' |
|||||||
21591 | 5' | -51.2 | NC_004812.1 | + | 79698 | 0.71 | 0.909885 |
Target: 5'- uCGGGGGGcuGCGGGUGGCCCccGCc -3' miRNA: 3'- cGCUCUCUuuUGUCUAUCGGGucCGc -5' |
|||||||
21591 | 5' | -51.2 | NC_004812.1 | + | 29234 | 0.71 | 0.903529 |
Target: 5'- gGCGGGGGuc-GCGGAggagcgGGCCgGGGCu -3' miRNA: 3'- -CGCUCUCuuuUGUCUa-----UCGGgUCCGc -5' |
|||||||
21591 | 5' | -51.2 | NC_004812.1 | + | 148518 | 0.71 | 0.896924 |
Target: 5'- gGgGAGGGggGGCGGcgcgGGCcgCCGGGCGc -3' miRNA: 3'- -CgCUCUCuuUUGUCua--UCG--GGUCCGC- -5' |
|||||||
21591 | 5' | -51.2 | NC_004812.1 | + | 148093 | 0.72 | 0.868086 |
Target: 5'- gGCGAccGGGAuaaaAGGCAGccGGCUCGGGCGg -3' miRNA: 3'- -CGCU--CUCU----UUUGUCuaUCGGGUCCGC- -5' |
|||||||
21591 | 5' | -51.2 | NC_004812.1 | + | 155216 | 0.72 | 0.860297 |
Target: 5'- gGCGAGAGggGGCGc--GGCgCgGGGCGg -3' miRNA: 3'- -CGCUCUCuuUUGUcuaUCG-GgUCCGC- -5' |
|||||||
21591 | 5' | -51.2 | NC_004812.1 | + | 16830 | 0.72 | 0.860297 |
Target: 5'- cGCGGGgucGGGGggUAGGggugggAGUCCGGGCGg -3' miRNA: 3'- -CGCUC---UCUUuuGUCUa-----UCGGGUCCGC- -5' |
|||||||
21591 | 5' | -51.2 | NC_004812.1 | + | 40532 | 0.72 | 0.852289 |
Target: 5'- cGCGGGGGAGGGgAGggGGCgCGGGgGa -3' miRNA: 3'- -CGCUCUCUUUUgUCuaUCGgGUCCgC- -5' |
|||||||
21591 | 5' | -51.2 | NC_004812.1 | + | 36631 | 0.74 | 0.761868 |
Target: 5'- cGCGGGAGGAGGgcgcCGGGcgccGCCCAGGCc -3' miRNA: 3'- -CGCUCUCUUUU----GUCUau--CGGGUCCGc -5' |
|||||||
21591 | 5' | -51.2 | NC_004812.1 | + | 20125 | 0.74 | 0.742003 |
Target: 5'- cGCGcGGGGGAGCGGAccgGGCCCcGGCc -3' miRNA: 3'- -CGCuCUCUUUUGUCUa--UCGGGuCCGc -5' |
|||||||
21591 | 5' | -51.2 | NC_004812.1 | + | 153459 | 0.76 | 0.648704 |
Target: 5'- cGCGGGGGggGGCGGAggggAGCgC-GGCGg -3' miRNA: 3'- -CGCUCUCuuUUGUCUa---UCGgGuCCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home