miRNA display CGI


Results 61 - 80 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21591 5' -51.2 NC_004812.1 + 148518 0.71 0.896924
Target:  5'- gGgGAGGGggGGCGGcgcgGGCcgCCGGGCGc -3'
miRNA:   3'- -CgCUCUCuuUUGUCua--UCG--GGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 30802 0.71 0.909885
Target:  5'- cCGAGGGAGGGCGGGggacgggagggGGCCgAGGgGg -3'
miRNA:   3'- cGCUCUCUUUUGUCUa----------UCGGgUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 152617 0.77 0.606455
Target:  5'- aGCGGcGGcGAGAGCAGGU-GCCCGGGCc -3'
miRNA:   3'- -CGCU-CU-CUUUUGUCUAuCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 93290 0.76 0.680274
Target:  5'- aGCGAGA-AGAGCAgGAUGuGCuCCAGGCGg -3'
miRNA:   3'- -CGCUCUcUUUUGU-CUAU-CG-GGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 100879 0.74 0.742003
Target:  5'- gGCGGGGGAGGGCGccgcGGCCCccgAGGCGg -3'
miRNA:   3'- -CGCUCUCUUUUGUcua-UCGGG---UCCGC- -5'
21591 5' -51.2 NC_004812.1 + 20339 0.74 0.771622
Target:  5'- uCGAGuGcAGGGCGGGcacgGGCCCGGGCGu -3'
miRNA:   3'- cGCUCuC-UUUUGUCUa---UCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 40571 0.72 0.852289
Target:  5'- cGCGGGGGAGGGgAGggGGCgCGGGgGa -3'
miRNA:   3'- -CGCUCUCUUUUgUCuaUCGgGUCCgC- -5'
21591 5' -51.2 NC_004812.1 + 30050 0.72 0.860297
Target:  5'- gGCGGGGGAGGGgGGAggggcgcGCgCGGGCGg -3'
miRNA:   3'- -CGCUCUCUUUUgUCUau-----CGgGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 29937 0.72 0.868086
Target:  5'- gGCGcGAGGGAGCGGggGGC-CGGGCu -3'
miRNA:   3'- -CGCuCUCUUUUGUCuaUCGgGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 16637 0.72 0.873404
Target:  5'- cGCGAGGGcGugggcggccaggcuGAGCAGGaagagaaagucUAGCCCGGGUGa -3'
miRNA:   3'- -CGCUCUC-U--------------UUUGUCU-----------AUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 24248 0.68 0.966538
Target:  5'- uGCGGGaAGggGAaGGA-GGCCC-GGCGg -3'
miRNA:   3'- -CGCUC-UCuuUUgUCUaUCGGGuCCGC- -5'
21591 5' -51.2 NC_004812.1 + 67303 0.68 0.963159
Target:  5'- gGCGGGAGcgGGCucggGGAggcgAGCgCGGGCGc -3'
miRNA:   3'- -CGCUCUCuuUUG----UCUa---UCGgGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 25663 0.7 0.91599
Target:  5'- gGUG-GAGGAGAC----GGCCCGGGCGc -3'
miRNA:   3'- -CGCuCUCUUUUGucuaUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 152859 0.7 0.91599
Target:  5'- gGCGGGcuGGGccuGAGCGGcgGGCCUGGGCu -3'
miRNA:   3'- -CGCUC--UCU---UUUGUCuaUCGGGUCCGc -5'
21591 5' -51.2 NC_004812.1 + 17604 0.7 0.921841
Target:  5'- uGCGGGcGA----GGcgGGCCCGGGCGa -3'
miRNA:   3'- -CGCUCuCUuuugUCuaUCGGGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 94419 0.7 0.921841
Target:  5'- cCGGGGGGccGAAUcGGUGGCgCGGGCGg -3'
miRNA:   3'- cGCUCUCU--UUUGuCUAUCGgGUCCGC- -5'
21591 5' -51.2 NC_004812.1 + 102123 0.7 0.932778
Target:  5'- uGCGGGAGAAccuGCGGGacaucaaGGCCCuggacGGCGa -3'
miRNA:   3'- -CGCUCUCUUu--UGUCUa------UCGGGu----CCGC- -5'
21591 5' -51.2 NC_004812.1 + 104374 0.69 0.942698
Target:  5'- cGCGGGAGAuGAUAcgcuacAUGGCCCuGGUGu -3'
miRNA:   3'- -CGCUCUCUuUUGUc-----UAUCGGGuCCGC- -5'
21591 5' -51.2 NC_004812.1 + 22292 0.69 0.955702
Target:  5'- aGCGAGGGugacccucuGGCGGGggGGCCUcGGCGc -3'
miRNA:   3'- -CGCUCUCuu-------UUGUCUa-UCGGGuCCGC- -5'
21591 5' -51.2 NC_004812.1 + 152020 0.69 0.955702
Target:  5'- cCGGGucGggGGCGGGUcggcgGGCCCGGGgGu -3'
miRNA:   3'- cGCUCu-CuuUUGUCUA-----UCGGGUCCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.