miRNA display CGI


Results 41 - 60 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 3' -60.2 NC_004812.1 + 43755 0.66 0.755337
Target:  5'- uGgCGUGaGCCCagcgcgugaGCGCCgAGG-CCACg -3'
miRNA:   3'- -CgGCACaUGGGg--------UGCGGgUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 3648 0.66 0.755337
Target:  5'- aGCCcag-GCCCgGCGCCCAaGUCC-Cg -3'
miRNA:   3'- -CGGcacaUGGGgUGCGGGUcCAGGuG- -5'
21602 3' -60.2 NC_004812.1 + 32134 0.66 0.746011
Target:  5'- gGCCGg--ACgCCACGgCCGGGcccccgCCGCg -3'
miRNA:   3'- -CGGCacaUGgGGUGCgGGUCCa-----GGUG- -5'
21602 3' -60.2 NC_004812.1 + 119232 0.66 0.746011
Target:  5'- uGCC-UGUACCCgCAgGgcccgcucCCCGGGcCCGCg -3'
miRNA:   3'- -CGGcACAUGGG-GUgC--------GGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 139387 0.66 0.746011
Target:  5'- uCCGUGU-CCCC-CGCuCCAGcGgcaccggCCGCg -3'
miRNA:   3'- cGGCACAuGGGGuGCG-GGUC-Ca------GGUG- -5'
21602 3' -60.2 NC_004812.1 + 46402 0.66 0.717505
Target:  5'- uGCCGUcggcgucucGUGCagCGCGUCCAGGUacgCCGCc -3'
miRNA:   3'- -CGGCA---------CAUGggGUGCGGGUCCA---GGUG- -5'
21602 3' -60.2 NC_004812.1 + 63731 0.66 0.743195
Target:  5'- uGCCGgagcGUGCgCUgcgGCGCUucuccggagaucguCAGGUCCACg -3'
miRNA:   3'- -CGGCa---CAUGgGG---UGCGG--------------GUCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 156022 0.66 0.736592
Target:  5'- uCCGcGcUACCggagCCGCGCCCGcGGcUCCACg -3'
miRNA:   3'- cGGCaC-AUGG----GGUGCGGGU-CC-AGGUG- -5'
21602 3' -60.2 NC_004812.1 + 85378 0.66 0.736592
Target:  5'- cGCCGUcc-CCgCCGCGCCCucgcGG-CCGCc -3'
miRNA:   3'- -CGGCAcauGG-GGUGCGGGu---CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 150133 0.66 0.746011
Target:  5'- uGCC-UGUACCCgCAgGgcccgcucCCCGGGcCCGCg -3'
miRNA:   3'- -CGGcACAUGGG-GUgC--------GGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 61044 0.66 0.737538
Target:  5'- gGCCGUGcgguuagcccgcucgACCCCgccggggcgcgACGcCCCGGG-CCGCc -3'
miRNA:   3'- -CGGCACa--------------UGGGG-----------UGC-GGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 27681 0.66 0.736592
Target:  5'- cGCCGcGUGCCgCCgGgGCCCAG--CCACa -3'
miRNA:   3'- -CGGCaCAUGG-GG-UgCGGGUCcaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 5028 0.66 0.713653
Target:  5'- gGCCGacgACCCCGgGCCgGGGgcgcgcgagggcgCCGCg -3'
miRNA:   3'- -CGGCacaUGGGGUgCGGgUCCa------------GGUG- -5'
21602 3' -60.2 NC_004812.1 + 29658 0.66 0.736592
Target:  5'- cGCCGUGcccgGCCCuCGCgGCCCcGGccccuccCCGCg -3'
miRNA:   3'- -CGGCACa---UGGG-GUG-CGGGuCCa------GGUG- -5'
21602 3' -60.2 NC_004812.1 + 10858 0.66 0.717505
Target:  5'- cGUCGgGUcgcuccGCCCgCGCGcCCCGGGUcgCCGCg -3'
miRNA:   3'- -CGGCaCA------UGGG-GUGC-GGGUCCA--GGUG- -5'
21602 3' -60.2 NC_004812.1 + 34616 0.66 0.727087
Target:  5'- cGCCcaaGUcccGCCCgGCGCUCAGGcCCAg -3'
miRNA:   3'- -CGGca-CA---UGGGgUGCGGGUCCaGGUg -5'
21602 3' -60.2 NC_004812.1 + 133847 0.66 0.735645
Target:  5'- ------cGCCCCcaccuggACGCaCCAGGUCCACc -3'
miRNA:   3'- cggcacaUGGGG-------UGCG-GGUCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 14757 0.66 0.736592
Target:  5'- uGCCGUccACCgUCACGCCCugcucgaagaccGGG-CCGCg -3'
miRNA:   3'- -CGGCAcaUGG-GGUGCGGG------------UCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 36644 0.66 0.727087
Target:  5'- cGCCGg--GCgCC--GCCCAGGcCCACa -3'
miRNA:   3'- -CGGCacaUGgGGugCGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 639 0.66 0.764562
Target:  5'- aGCCGggaucgaGUGCgCCCaccaacgccGCGCCCGGG-CgGCg -3'
miRNA:   3'- -CGGCa------CAUG-GGG---------UGCGGGUCCaGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.