miRNA display CGI


Results 81 - 100 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 3' -60.2 NC_004812.1 + 126328 0.66 0.764562
Target:  5'- gGCCGggaagcgGUGUCCgACGCCCggAGGgccCCGCg -3'
miRNA:   3'- -CGGCa------CAUGGGgUGCGGG--UCCa--GGUG- -5'
21602 3' -60.2 NC_004812.1 + 44909 0.66 0.746011
Target:  5'- cGCCGUG-GCCCagauCGCCagcGG-CCACg -3'
miRNA:   3'- -CGGCACaUGGGgu--GCGGgu-CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 45183 0.67 0.688383
Target:  5'- gGCgCGUGcgucaCCCAgGCCCGGGagCGCa -3'
miRNA:   3'- -CG-GCACaug--GGGUgCGGGUCCagGUG- -5'
21602 3' -60.2 NC_004812.1 + 130779 0.67 0.688383
Target:  5'- cGCCGcg-GCCCCGCGCUC-GG-CCGa -3'
miRNA:   3'- -CGGCacaUGGGGUGCGGGuCCaGGUg -5'
21602 3' -60.2 NC_004812.1 + 143544 0.67 0.698145
Target:  5'- cGCCGUGaacgaggcgGCCCUggcGCGCCUGGG-CgACg -3'
miRNA:   3'- -CGGCACa--------UGGGG---UGCGGGUCCaGgUG- -5'
21602 3' -60.2 NC_004812.1 + 15990 0.67 0.688383
Target:  5'- cGCCGaccccgcgGCCCCGCGCCagcagCAGcUCCGCc -3'
miRNA:   3'- -CGGCaca-----UGGGGUGCGG-----GUCcAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 138842 0.67 0.695222
Target:  5'- -gCGUGUccccgcaggACCCCGCGguacCCCAGGacauggccuacgucUCCGCg -3'
miRNA:   3'- cgGCACA---------UGGGGUGC----GGGUCC--------------AGGUG- -5'
21602 3' -60.2 NC_004812.1 + 13828 0.67 0.698145
Target:  5'- aGCCGggcGUACUCC-CGCa-GGGUCCGg -3'
miRNA:   3'- -CGGCa--CAUGGGGuGCGggUCCAGGUg -5'
21602 3' -60.2 NC_004812.1 + 51551 0.67 0.698145
Target:  5'- gGCCaGUGUGCgCCCGCGgCCGGaG-CgGCg -3'
miRNA:   3'- -CGG-CACAUG-GGGUGCgGGUC-CaGgUG- -5'
21602 3' -60.2 NC_004812.1 + 101283 0.67 0.698145
Target:  5'- cGCCGca-GCUCCgACGCCCGGGcgucggcCCGCg -3'
miRNA:   3'- -CGGCacaUGGGG-UGCGGGUCCa------GGUG- -5'
21602 3' -60.2 NC_004812.1 + 94098 0.67 0.688383
Target:  5'- cGCuCGcGUGCgCCCugGCCCuGGUgCGg -3'
miRNA:   3'- -CG-GCaCAUG-GGGugCGGGuCCAgGUg -5'
21602 3' -60.2 NC_004812.1 + 67647 0.67 0.688383
Target:  5'- gGCUGgg-GCCCCugGCCgCcGG-CCGCg -3'
miRNA:   3'- -CGGCacaUGGGGugCGG-GuCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 93558 0.67 0.698145
Target:  5'- uGCCGUcccgCCCGCGCCCcaggcGGUaCCACc -3'
miRNA:   3'- -CGGCAcaugGGGUGCGGGu----CCA-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 44617 0.67 0.707855
Target:  5'- cGCCagcc-CCCCGCGCUUGGGgggCCGCg -3'
miRNA:   3'- -CGGcacauGGGGUGCGGGUCCa--GGUG- -5'
21602 3' -60.2 NC_004812.1 + 73590 0.67 0.707855
Target:  5'- -aCGaGUACCUCACGaCCAGGgaCCGCg -3'
miRNA:   3'- cgGCaCAUGGGGUGCgGGUCCa-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 148573 0.67 0.687405
Target:  5'- cGCCGggggGUGCcggcggaggccggCCCGCGCCCcccgGGGUCgCGg -3'
miRNA:   3'- -CGGCa---CAUG-------------GGGUGCGGG----UCCAG-GUg -5'
21602 3' -60.2 NC_004812.1 + 88420 0.67 0.706887
Target:  5'- gGCCGggcGUccggcgcGCCCC-CGCCCGcGG-CCGCc -3'
miRNA:   3'- -CGGCa--CA-------UGGGGuGCGGGU-CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 106874 0.67 0.698145
Target:  5'- cGCCGcg-ACCCCGaccccgucggcCGUCCGGcGUCUACg -3'
miRNA:   3'- -CGGCacaUGGGGU-----------GCGGGUC-CAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 121031 0.67 0.687405
Target:  5'- cGCCGUcggGUGCCCCcgcCGCCCccucccucuauccGGGccCCGCc -3'
miRNA:   3'- -CGGCA---CAUGGGGu--GCGGG-------------UCCa-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 4727 0.67 0.688383
Target:  5'- gGgCGUGUGCCCgCuCGCCCGGGa---- -3'
miRNA:   3'- -CgGCACAUGGG-GuGCGGGUCCaggug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.