Results 41 - 60 of 286 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21602 | 3' | -60.2 | NC_004812.1 | + | 59196 | 0.71 | 0.447383 |
Target: 5'- cGCCGUcgACCCaccaguaCGCGCCCgAGGcCCGCg -3' miRNA: 3'- -CGGCAcaUGGG-------GUGCGGG-UCCaGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 26345 | 0.71 | 0.448266 |
Target: 5'- aGCCGUG-GCCCgGCGCCgAGccgCCGCc -3' miRNA: 3'- -CGGCACaUGGGgUGCGGgUCca-GGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 10984 | 0.71 | 0.466128 |
Target: 5'- gGCCGUGcuggcgcGCCCCgGCGgaCCaCGGGUCCGCc -3' miRNA: 3'- -CGGCACa------UGGGG-UGC--GG-GUCCAGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 30250 | 0.71 | 0.45715 |
Target: 5'- cGCUGgggaaGUGCCaCCACGCCCccGGGcCCAg -3' miRNA: 3'- -CGGCa----CAUGG-GGUGCGGG--UCCaGGUg -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 101857 | 0.71 | 0.448266 |
Target: 5'- cGCCGUGU-CCaCCGCcCCCAGGUaCCc- -3' miRNA: 3'- -CGGCACAuGG-GGUGcGGGUCCA-GGug -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 151728 | 0.7 | 0.502909 |
Target: 5'- cGCCGUGgccggGCgCgACGCCaCGGG-CCGCu -3' miRNA: 3'- -CGGCACa----UGgGgUGCGG-GUCCaGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 151 | 0.7 | 0.484351 |
Target: 5'- cGCCGc--GCCgCCGCGCCCGcGGcCCGCc -3' miRNA: 3'- -CGGCacaUGG-GGUGCGGGU-CCaGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 95628 | 0.7 | 0.502909 |
Target: 5'- gGCCGg--GCUCCAccucCGCCCAGuUCCGCu -3' miRNA: 3'- -CGGCacaUGGGGU----GCGGGUCcAGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 150675 | 0.7 | 0.516082 |
Target: 5'- cGCCG-GUcgcCCCCGCGCuCCGGGcggcgucgcggcggcUCCGCc -3' miRNA: 3'- -CGGCaCAu--GGGGUGCG-GGUCC---------------AGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 25884 | 0.7 | 0.508537 |
Target: 5'- gGCCGgcccucccgcgGCgCCCGCGCCCAGcG-CCGCg -3' miRNA: 3'- -CGGCaca--------UG-GGGUGCGGGUC-CaGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 8044 | 0.7 | 0.512304 |
Target: 5'- cGCCG-GcACCCCccgGCGCCCGgccGGcCCGCg -3' miRNA: 3'- -CGGCaCaUGGGG---UGCGGGU---CCaGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 19052 | 0.7 | 0.484351 |
Target: 5'- gGCCGcGgcgGCCgagaCCGCgGCCCAGGcCCGCg -3' miRNA: 3'- -CGGCaCa--UGG----GGUG-CGGGUCCaGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 156561 | 0.7 | 0.484351 |
Target: 5'- cGCCGc--GCCgCCGCGCCCGcGGcCCGCc -3' miRNA: 3'- -CGGCacaUGG-GGUGCGGGU-CCaGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 69540 | 0.7 | 0.531303 |
Target: 5'- gGCCGccc-CCCCGCGCCCcuGcCCGCg -3' miRNA: 3'- -CGGCacauGGGGUGCGGGucCaGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 95880 | 0.7 | 0.531303 |
Target: 5'- gGCCGagggGgcggGCCCCGaugccCGCCCucGGGUCUACu -3' miRNA: 3'- -CGGCa---Ca---UGGGGU-----GCGGG--UCCAGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 130375 | 0.7 | 0.530347 |
Target: 5'- gGCCGUGaagcgGCCCguggcguCGCGCCC-GG-CCACg -3' miRNA: 3'- -CGGCACa----UGGG-------GUGCGGGuCCaGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 4194 | 0.7 | 0.52177 |
Target: 5'- cGCCGaggGcGCCCCcgcgGCGCCCGGccCCACg -3' miRNA: 3'- -CGGCa--CaUGGGG----UGCGGGUCcaGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 76343 | 0.7 | 0.52177 |
Target: 5'- cGCCGc--ACCgCCAC-CgCCAGGUCCGCg -3' miRNA: 3'- -CGGCacaUGG-GGUGcG-GGUCCAGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 14209 | 0.7 | 0.52177 |
Target: 5'- gGCCGUccucgGCCCCGCcCCCGGcGgCCACg -3' miRNA: 3'- -CGGCAca---UGGGGUGcGGGUC-CaGGUG- -5' |
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21602 | 3' | -60.2 | NC_004812.1 | + | 125660 | 0.7 | 0.484351 |
Target: 5'- cGCCGc--GCCgCCGCGCCCGcGGcCCGCc -3' miRNA: 3'- -CGGCacaUGG-GGUGCGGGU-CCaGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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