miRNA display CGI


Results 61 - 80 of 286 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 3' -60.2 NC_004812.1 + 21677 0.7 0.512304
Target:  5'- gGCUGgg-ACCCCuCGUCCgAGGUCCAa -3'
miRNA:   3'- -CGGCacaUGGGGuGCGGG-UCCAGGUg -5'
21602 3' -60.2 NC_004812.1 + 55942 0.7 0.502909
Target:  5'- cGCCGg--GCCCgACGCCgAGGcCCGg -3'
miRNA:   3'- -CGGCacaUGGGgUGCGGgUCCaGGUg -5'
21602 3' -60.2 NC_004812.1 + 26220 0.7 0.502909
Target:  5'- cGCCGUGgccggGCgCgACGCCaCGGG-CCGCu -3'
miRNA:   3'- -CGGCACa----UGgGgUGCGG-GUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 4194 0.7 0.52177
Target:  5'- cGCCGaggGcGCCCCcgcgGCGCCCGGccCCACg -3'
miRNA:   3'- -CGGCa--CaUGGGG----UGCGGGUCcaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 106112 0.7 0.49359
Target:  5'- cGCgCGgGUgagcGCCUCgGCGCCCGGcGUCCACa -3'
miRNA:   3'- -CG-GCaCA----UGGGG-UGCGGGUC-CAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 69540 0.7 0.531303
Target:  5'- gGCCGccc-CCCCGCGCCCcuGcCCGCg -3'
miRNA:   3'- -CGGCacauGGGGUGCGGGucCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 95880 0.7 0.531303
Target:  5'- gGCCGagggGgcggGCCCCGaugccCGCCCucGGGUCUACu -3'
miRNA:   3'- -CGGCa---Ca---UGGGGU-----GCGGG--UCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 133355 0.7 0.52177
Target:  5'- gGCCGUGgACCUgGCGCaggUAGGUCCcGCu -3'
miRNA:   3'- -CGGCACaUGGGgUGCGg--GUCCAGG-UG- -5'
21602 3' -60.2 NC_004812.1 + 156561 0.7 0.484351
Target:  5'- cGCCGc--GCCgCCGCGCCCGcGGcCCGCc -3'
miRNA:   3'- -CGGCacaUGG-GGUGCGGGU-CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 48215 0.7 0.52177
Target:  5'- cGCCGgcgcgagcgGaGCCCCGCgGCCCAGGgccUCCuGCa -3'
miRNA:   3'- -CGGCa--------CaUGGGGUG-CGGGUCC---AGG-UG- -5'
21602 3' -60.2 NC_004812.1 + 35095 0.7 0.52177
Target:  5'- cGCCGaggGcGCCCCcgcgGCGCCCGGccCCACg -3'
miRNA:   3'- -CGGCa--CaUGGGG----UGCGGGUCcaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 4867 0.7 0.530347
Target:  5'- gGCCGUGaagcgGCCCguggcguCGCGCCC-GG-CCACg -3'
miRNA:   3'- -CGGCACa----UGGG-------GUGCGGGuCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 25166 0.7 0.531303
Target:  5'- cGCCG-GUcgcCCCCGCGCuCCGGGgcggcgUCGCg -3'
miRNA:   3'- -CGGCaCAu--GGGGUGCG-GGUCCa-----GGUG- -5'
21602 3' -60.2 NC_004812.1 + 10721 0.69 0.579803
Target:  5'- cGCCGUuccCUCCACGCUCGcGGUCCuCg -3'
miRNA:   3'- -CGGCAcauGGGGUGCGGGU-CCAGGuG- -5'
21602 3' -60.2 NC_004812.1 + 119372 0.69 0.579803
Target:  5'- uGCCGcccccUGcUGCCCCuccUGCCCGGGgccccCCGCg -3'
miRNA:   3'- -CGGC-----AC-AUGGGGu--GCGGGUCCa----GGUG- -5'
21602 3' -60.2 NC_004812.1 + 154084 0.69 0.540899
Target:  5'- cGCCGUGcUG-CCCGCGCUCGacGG-CCGCg -3'
miRNA:   3'- -CGGCAC-AUgGGGUGCGGGU--CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 93417 0.69 0.579803
Target:  5'- gGCCGUGUuccugcuggACCCCcagaacauCGCCUcGGUCCcCg -3'
miRNA:   3'- -CGGCACA---------UGGGGu-------GCGGGuCCAGGuG- -5'
21602 3' -60.2 NC_004812.1 + 19802 0.69 0.589631
Target:  5'- gGCCGcucGgcccACCUCGCGCuCCAGGgCCACc -3'
miRNA:   3'- -CGGCa--Ca---UGGGGUGCG-GGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 3822 0.69 0.560258
Target:  5'- gGCC-UGcgGCCCCGC-CCCAGGccCCGCc -3'
miRNA:   3'- -CGGcACa-UGGGGUGcGGGUCCa-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 1225 0.69 0.589631
Target:  5'- cGCCGcGgggGCUCCucccCGCCCGGGcggcgCCGCg -3'
miRNA:   3'- -CGGCaCa--UGGGGu---GCGGGUCCa----GGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.