miRNA display CGI


Results 41 - 60 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 3' -60.2 NC_004812.1 + 26345 0.71 0.448266
Target:  5'- aGCCGUG-GCCCgGCGCCgAGccgCCGCc -3'
miRNA:   3'- -CGGCACaUGGGgUGCGGgUCca-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 151853 0.71 0.448266
Target:  5'- aGCCGUG-GCCCgGCGCCgAGccgCCGCc -3'
miRNA:   3'- -CGGCACaUGGGgUGCGGgUCca-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 101857 0.71 0.448266
Target:  5'- cGCCGUGU-CCaCCGCcCCCAGGUaCCc- -3'
miRNA:   3'- -CGGCACAuGG-GGUGcGGGUCCA-GGug -5'
21602 3' -60.2 NC_004812.1 + 30250 0.71 0.45715
Target:  5'- cGCUGgggaaGUGCCaCCACGCCCccGGGcCCAg -3'
miRNA:   3'- -CGGCa----CAUGG-GGUGCGGG--UCCaGGUg -5'
21602 3' -60.2 NC_004812.1 + 10984 0.71 0.466128
Target:  5'- gGCCGUGcuggcgcGCCCCgGCGgaCCaCGGGUCCGCc -3'
miRNA:   3'- -CGGCACa------UGGGG-UGC--GG-GUCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 156561 0.7 0.484351
Target:  5'- cGCCGc--GCCgCCGCGCCCGcGGcCCGCc -3'
miRNA:   3'- -CGGCacaUGG-GGUGCGGGU-CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 125660 0.7 0.484351
Target:  5'- cGCCGc--GCCgCCGCGCCCGcGGcCCGCc -3'
miRNA:   3'- -CGGCacaUGG-GGUGCGGGU-CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 19052 0.7 0.484351
Target:  5'- gGCCGcGgcgGCCgagaCCGCgGCCCAGGcCCGCg -3'
miRNA:   3'- -CGGCaCa--UGG----GGUG-CGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 151 0.7 0.484351
Target:  5'- cGCCGc--GCCgCCGCGCCCGcGGcCCGCc -3'
miRNA:   3'- -CGGCacaUGG-GGUGCGGGU-CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 45583 0.7 0.49359
Target:  5'- gGCCGUuccucGCgCCCACGCUCAGGgCCAg -3'
miRNA:   3'- -CGGCAca---UG-GGGUGCGGGUCCaGGUg -5'
21602 3' -60.2 NC_004812.1 + 106112 0.7 0.49359
Target:  5'- cGCgCGgGUgagcGCCUCgGCGCCCGGcGUCCACa -3'
miRNA:   3'- -CG-GCaCA----UGGGG-UGCGGGUC-CAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 55942 0.7 0.502909
Target:  5'- cGCCGg--GCCCgACGCCgAGGcCCGg -3'
miRNA:   3'- -CGGCacaUGGGgUGCGGgUCCaGGUg -5'
21602 3' -60.2 NC_004812.1 + 45837 0.7 0.502909
Target:  5'- aCCGUGUcCCCCACcCCCAG-UCgCGCg -3'
miRNA:   3'- cGGCACAuGGGGUGcGGGUCcAG-GUG- -5'
21602 3' -60.2 NC_004812.1 + 26220 0.7 0.502909
Target:  5'- cGCCGUGgccggGCgCgACGCCaCGGG-CCGCu -3'
miRNA:   3'- -CGGCACa----UGgGgUGCGG-GUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 95628 0.7 0.502909
Target:  5'- gGCCGg--GCUCCAccucCGCCCAGuUCCGCu -3'
miRNA:   3'- -CGGCacaUGGGGU----GCGGGUCcAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 151728 0.7 0.502909
Target:  5'- cGCCGUGgccggGCgCgACGCCaCGGG-CCGCu -3'
miRNA:   3'- -CGGCACa----UGgGgUGCGG-GUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 25884 0.7 0.508537
Target:  5'- gGCCGgcccucccgcgGCgCCCGCGCCCAGcG-CCGCg -3'
miRNA:   3'- -CGGCaca--------UG-GGGUGCGGGUC-CaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 107605 0.7 0.512304
Target:  5'- -gCGUGgGCCCgGcCGCCgGGGUUCACg -3'
miRNA:   3'- cgGCACaUGGGgU-GCGGgUCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 21677 0.7 0.512304
Target:  5'- gGCUGgg-ACCCCuCGUCCgAGGUCCAa -3'
miRNA:   3'- -CGGCacaUGGGGuGCGGG-UCCAGGUg -5'
21602 3' -60.2 NC_004812.1 + 8044 0.7 0.512304
Target:  5'- cGCCG-GcACCCCccgGCGCCCGgccGGcCCGCg -3'
miRNA:   3'- -CGGCaCaUGGGG---UGCGGGU---CCaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.