miRNA display CGI


Results 61 - 80 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 3' -60.2 NC_004812.1 + 8044 0.7 0.512304
Target:  5'- cGCCG-GcACCCCccgGCGCCCGgccGGcCCGCg -3'
miRNA:   3'- -CGGCaCaUGGGG---UGCGGGU---CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 150675 0.7 0.516082
Target:  5'- cGCCG-GUcgcCCCCGCGCuCCGGGcggcgucgcggcggcUCCGCc -3'
miRNA:   3'- -CGGCaCAu--GGGGUGCG-GGUCC---------------AGGUG- -5'
21602 3' -60.2 NC_004812.1 + 48215 0.7 0.52177
Target:  5'- cGCCGgcgcgagcgGaGCCCCGCgGCCCAGGgccUCCuGCa -3'
miRNA:   3'- -CGGCa--------CaUGGGGUG-CGGGUCC---AGG-UG- -5'
21602 3' -60.2 NC_004812.1 + 76343 0.7 0.52177
Target:  5'- cGCCGc--ACCgCCAC-CgCCAGGUCCGCg -3'
miRNA:   3'- -CGGCacaUGG-GGUGcG-GGUCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 14209 0.7 0.52177
Target:  5'- gGCCGUccucgGCCCCGCcCCCGGcGgCCACg -3'
miRNA:   3'- -CGGCAca---UGGGGUGcGGGUC-CaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 4194 0.7 0.52177
Target:  5'- cGCCGaggGcGCCCCcgcgGCGCCCGGccCCACg -3'
miRNA:   3'- -CGGCa--CaUGGGG----UGCGGGUCcaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 35095 0.7 0.52177
Target:  5'- cGCCGaggGcGCCCCcgcgGCGCCCGGccCCACg -3'
miRNA:   3'- -CGGCa--CaUGGGG----UGCGGGUCcaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 133355 0.7 0.52177
Target:  5'- gGCCGUGgACCUgGCGCaggUAGGUCCcGCu -3'
miRNA:   3'- -CGGCACaUGGGgUGCGg--GUCCAGG-UG- -5'
21602 3' -60.2 NC_004812.1 + 4867 0.7 0.530347
Target:  5'- gGCCGUGaagcgGCCCguggcguCGCGCCC-GG-CCACg -3'
miRNA:   3'- -CGGCACa----UGGG-------GUGCGGGuCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 130375 0.7 0.530347
Target:  5'- gGCCGUGaagcgGCCCguggcguCGCGCCC-GG-CCACg -3'
miRNA:   3'- -CGGCACa----UGGG-------GUGCGGGuCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 25166 0.7 0.531303
Target:  5'- cGCCG-GUcgcCCCCGCGCuCCGGGgcggcgUCGCg -3'
miRNA:   3'- -CGGCaCAu--GGGGUGCG-GGUCCa-----GGUG- -5'
21602 3' -60.2 NC_004812.1 + 69540 0.7 0.531303
Target:  5'- gGCCGccc-CCCCGCGCCCcuGcCCGCg -3'
miRNA:   3'- -CGGCacauGGGGUGCGGGucCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 95880 0.7 0.531303
Target:  5'- gGCCGagggGgcggGCCCCGaugccCGCCCucGGGUCUACu -3'
miRNA:   3'- -CGGCa---Ca---UGGGGU-----GCGGG--UCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 28576 0.69 0.540899
Target:  5'- cGCCGUGcUG-CCCGCGCUCGacGG-CCGCg -3'
miRNA:   3'- -CGGCAC-AUgGGGUGCGGGU--CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 154084 0.69 0.540899
Target:  5'- cGCCGUGcUG-CCCGCGCUCGacGG-CCGCg -3'
miRNA:   3'- -CGGCAC-AUgGGGUGCGGGU--CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 144010 0.69 0.540899
Target:  5'- aCCG-GUuucaCCUACGCCCGGGUgUACg -3'
miRNA:   3'- cGGCaCAug--GGGUGCGGGUCCAgGUG- -5'
21602 3' -60.2 NC_004812.1 + 80318 0.69 0.544754
Target:  5'- gGCCaggGUG-GCCCCACGCguguuuaugcgacccCCGGGcCCGCa -3'
miRNA:   3'- -CGG---CACaUGGGGUGCG---------------GGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 8212 0.69 0.547651
Target:  5'- gGCCGgggGCCCgcgucggaCGCGCCCggcggccgggccggGGGUCCGCc -3'
miRNA:   3'- -CGGCacaUGGG--------GUGCGGG--------------UCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 39113 0.69 0.547651
Target:  5'- gGCCGgggGCCCgcgucggaCGCGCCCggcggccgggccggGGGUCCGCc -3'
miRNA:   3'- -CGGCacaUGGG--------GUGCGGG--------------UCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 41500 0.69 0.549585
Target:  5'- cGCCGUGccUGCugcucgacgcugaCCCACGCCCacgugauccuggGGGUCCuGCu -3'
miRNA:   3'- -CGGCAC--AUG-------------GGGUGCGGG------------UCCAGG-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.