miRNA display CGI


Results 81 - 100 of 286 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 3' -60.2 NC_004812.1 + 144698 0.69 0.550552
Target:  5'- cGCCGccccaccccACCCCAuCGCCgAGGUCgCGCa -3'
miRNA:   3'- -CGGCaca------UGGGGU-GCGGgUCCAG-GUG- -5'
21602 3' -60.2 NC_004812.1 + 127282 0.69 0.550552
Target:  5'- aGCCGc--GCCCCGCGCCgaCGGGagCGCg -3'
miRNA:   3'- -CGGCacaUGGGGUGCGG--GUCCagGUG- -5'
21602 3' -60.2 NC_004812.1 + 30742 0.69 0.550552
Target:  5'- cGCagGUGUcgaGCUCCACgauGCCCGGGgCCGCg -3'
miRNA:   3'- -CGg-CACA---UGGGGUG---CGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 83032 0.69 0.550552
Target:  5'- cGCC-UGaccCCCCACcccaGCCCggAGGUCCGCg -3'
miRNA:   3'- -CGGcACau-GGGGUG----CGGG--UCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 91858 0.69 0.550552
Target:  5'- -aCGUGUACaUCACGUuccaCAGGUCCACc -3'
miRNA:   3'- cgGCACAUGgGGUGCGg---GUCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 14676 0.69 0.550552
Target:  5'- gGCCGUGccACCCCGCGgCCUgcAGGcuguagacggCCACg -3'
miRNA:   3'- -CGGCACa-UGGGGUGC-GGG--UCCa---------GGUG- -5'
21602 3' -60.2 NC_004812.1 + 1774 0.69 0.550552
Target:  5'- aGCCGc--GCCCCGCGCCgaCGGGagCGCg -3'
miRNA:   3'- -CGGCacaUGGGGUGCGG--GUCCagGUG- -5'
21602 3' -60.2 NC_004812.1 + 55412 0.69 0.554428
Target:  5'- gGCCGcGggGCCCCugGCCCcgcagaccggacccgAGG-CCGCc -3'
miRNA:   3'- -CGGCaCa-UGGGGugCGGG---------------UCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 58059 0.69 0.559285
Target:  5'- cUCGUGgGCCCCgGCGCCCggcgccgAGG-CCGCg -3'
miRNA:   3'- cGGCACaUGGGG-UGCGGG-------UCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 77821 0.69 0.559285
Target:  5'- aCCGcGUccacGCCCCGCGCcaggcguCCAGGgcgCCGCg -3'
miRNA:   3'- cGGCaCA----UGGGGUGCG-------GGUCCa--GGUG- -5'
21602 3' -60.2 NC_004812.1 + 78844 0.69 0.560258
Target:  5'- gGCgGUGUcCCCCGaggaGCCCGGGgagggcggaggCCGCc -3'
miRNA:   3'- -CGgCACAuGGGGUg---CGGGUCCa----------GGUG- -5'
21602 3' -60.2 NC_004812.1 + 84406 0.69 0.560258
Target:  5'- gGCCGcGgacGCCCCGCGacgaCCCGGGgcccccggCCGCa -3'
miRNA:   3'- -CGGCaCa--UGGGGUGC----GGGUCCa-------GGUG- -5'
21602 3' -60.2 NC_004812.1 + 34723 0.69 0.560258
Target:  5'- gGCC-UGcgGCCCCGC-CCCAGGccCCGCc -3'
miRNA:   3'- -CGGcACa-UGGGGUGcGGGUCCa-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 141374 0.69 0.560258
Target:  5'- cGCCGgGUccGCCCUGCGCgaagcagucggCCAGG-CCGCg -3'
miRNA:   3'- -CGGCaCA--UGGGGUGCG-----------GGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 40204 0.69 0.560258
Target:  5'- gGCCGcGgggGCUCUGCGCggGGGUCCGCg -3'
miRNA:   3'- -CGGCaCa--UGGGGUGCGggUCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 3822 0.69 0.560258
Target:  5'- gGCC-UGcgGCCCCGC-CCCAGGccCCGCc -3'
miRNA:   3'- -CGGcACa-UGGGGUGcGGGUCCa-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 113425 0.69 0.560258
Target:  5'- aGCC-UGUACCgcacguucgugaCCaACGCCCGGGccgCCGCg -3'
miRNA:   3'- -CGGcACAUGG------------GG-UGCGGGUCCa--GGUG- -5'
21602 3' -60.2 NC_004812.1 + 25782 0.69 0.57001
Target:  5'- gGCCGUcGUcaGCCCC-CGCCgcagcaGGGcCCACa -3'
miRNA:   3'- -CGGCA-CA--UGGGGuGCGGg-----UCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 94886 0.69 0.57001
Target:  5'- cGCCGcgGgaccucaccACCCCGCuCCUcgGGGUCCACg -3'
miRNA:   3'- -CGGCa-Ca--------UGGGGUGcGGG--UCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 138128 0.69 0.57001
Target:  5'- uGCCuGUGUcuggGCCCCGCggGCgCGGGgCCGCg -3'
miRNA:   3'- -CGG-CACA----UGGGGUG--CGgGUCCaGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.