miRNA display CGI


Results 101 - 120 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 3' -60.2 NC_004812.1 + 25782 0.69 0.57001
Target:  5'- gGCCGUcGUcaGCCCC-CGCCgcagcaGGGcCCACa -3'
miRNA:   3'- -CGGCA-CA--UGGGGuGCGGg-----UCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 150273 0.69 0.579803
Target:  5'- uGCCGcccccUGcUGCCCCuccUGCCCGGGgccccCCGCg -3'
miRNA:   3'- -CGGC-----AC-AUGGGGu--GCGGGUCCa----GGUG- -5'
21602 3' -60.2 NC_004812.1 + 93417 0.69 0.579803
Target:  5'- gGCCGUGUuccugcuggACCCCcagaacauCGCCUcGGUCCcCg -3'
miRNA:   3'- -CGGCACA---------UGGGGu-------GCGGGuCCAGGuG- -5'
21602 3' -60.2 NC_004812.1 + 119372 0.69 0.579803
Target:  5'- uGCCGcccccUGcUGCCCCuccUGCCCGGGgccccCCGCg -3'
miRNA:   3'- -CGGC-----AC-AUGGGGu--GCGGGUCCa----GGUG- -5'
21602 3' -60.2 NC_004812.1 + 10721 0.69 0.579803
Target:  5'- cGCCGUuccCUCCACGCUCGcGGUCCuCg -3'
miRNA:   3'- -CGGCAcauGGGGUGCGGGU-CCAGGuG- -5'
21602 3' -60.2 NC_004812.1 + 135486 0.69 0.579803
Target:  5'- -aCGUGUcGCUgCAgGCCCAGG-CCGCc -3'
miRNA:   3'- cgGCACA-UGGgGUgCGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 21052 0.69 0.579803
Target:  5'- aCCGU--GCCCCGCcugugGCCgGGGUCCGa -3'
miRNA:   3'- cGGCAcaUGGGGUG-----CGGgUCCAGGUg -5'
21602 3' -60.2 NC_004812.1 + 79113 0.69 0.579803
Target:  5'- uGCaggaaGUGgcCCgCCGgGCCCGGGUCC-Ca -3'
miRNA:   3'- -CGg----CACauGG-GGUgCGGGUCCAGGuG- -5'
21602 3' -60.2 NC_004812.1 + 85169 0.69 0.579803
Target:  5'- cGCCGaGUGCCUgCGgGCCauGGUCCACa -3'
miRNA:   3'- -CGGCaCAUGGG-GUgCGGguCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 1225 0.69 0.589631
Target:  5'- cGCCGcGgggGCUCCucccCGCCCGGGcggcgCCGCg -3'
miRNA:   3'- -CGGCaCa--UGGGGu---GCGGGUCCa----GGUG- -5'
21602 3' -60.2 NC_004812.1 + 19802 0.69 0.589631
Target:  5'- gGCCGcucGgcccACCUCGCGCuCCAGGgCCACc -3'
miRNA:   3'- -CGGCa--Ca---UGGGGUGCG-GGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 32126 0.69 0.589631
Target:  5'- cGCCGcGgggGCUCCucccCGCCCGGGcggcgCCGCg -3'
miRNA:   3'- -CGGCaCa--UGGGGu---GCGGGUCCa----GGUG- -5'
21602 3' -60.2 NC_004812.1 + 85623 0.69 0.589631
Target:  5'- gGCCGUcuggaggcGUuccgGCCCCACGCCuCGGGg-CGCu -3'
miRNA:   3'- -CGGCA--------CA----UGGGGUGCGG-GUCCagGUG- -5'
21602 3' -60.2 NC_004812.1 + 34430 0.68 0.597515
Target:  5'- cGCCcaccagaCCCAgGCCCAGGcCCGCg -3'
miRNA:   3'- -CGGcacaug-GGGUgCGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 3529 0.68 0.597515
Target:  5'- cGCCcaccagaCCCAgGCCCAGGcCCGCg -3'
miRNA:   3'- -CGGcacaug-GGGUgCGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 93223 0.68 0.599488
Target:  5'- cGUCGgcgcgGgcagGCCCCGCGCCUcgAGaUCCGCg -3'
miRNA:   3'- -CGGCa----Ca---UGGGGUGCGGG--UCcAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 46161 0.68 0.599488
Target:  5'- gGCUGUGU-CCgugggcguaCACGCCCGuGUCCACc -3'
miRNA:   3'- -CGGCACAuGGg--------GUGCGGGUcCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 64217 0.68 0.599488
Target:  5'- cGCCaagGUGcucgACCCCACGUCCGGcuUUCACg -3'
miRNA:   3'- -CGG---CACa---UGGGGUGCGGGUCc-AGGUG- -5'
21602 3' -60.2 NC_004812.1 + 108418 0.68 0.599488
Target:  5'- cGCaCGUGgcgcggACCCUcgACGCCgAGG-CCACc -3'
miRNA:   3'- -CG-GCACa-----UGGGG--UGCGGgUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 76738 0.68 0.599488
Target:  5'- cGCCGg--GCCCUggGCCCGGcGgCCGCu -3'
miRNA:   3'- -CGGCacaUGGGGugCGGGUC-CaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.