miRNA display CGI


Results 61 - 80 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 3' -60.2 NC_004812.1 + 5743 0.66 0.727087
Target:  5'- cGCCGg--GCgCC--GCCCAGGcCCACa -3'
miRNA:   3'- -CGGCacaUGgGGugCGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 34616 0.66 0.727087
Target:  5'- cGCCcaaGUcccGCCCgGCGCUCAGGcCCAg -3'
miRNA:   3'- -CGGca-CA---UGGGgUGCGGGUCCaGGUg -5'
21602 3' -60.2 NC_004812.1 + 36644 0.66 0.727087
Target:  5'- cGCCGg--GCgCC--GCCCAGGcCCACa -3'
miRNA:   3'- -CGGCacaUGgGGugCGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 152160 0.66 0.727087
Target:  5'- cGCCGggGUACUCgggcggggacaCGCgGCCCGGGgCCGCc -3'
miRNA:   3'- -CGGCa-CAUGGG-----------GUG-CGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 97231 0.66 0.727087
Target:  5'- -gCGUGggGCCUCGCGCCCugcGGGgCCGg -3'
miRNA:   3'- cgGCACa-UGGGGUGCGGG---UCCaGGUg -5'
21602 3' -60.2 NC_004812.1 + 93860 0.66 0.727087
Target:  5'- gGUCGcgGgggGCCCgGCaGCCCAgccgccGGUCCACc -3'
miRNA:   3'- -CGGCa-Ca--UGGGgUG-CGGGU------CCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 20264 0.66 0.727087
Target:  5'- cGCCGUGUuuuucggucgugucGCCCCucgagugcgcgagcgGuccugacguccagCGCCCGGGgCCGCg -3'
miRNA:   3'- -CGGCACA--------------UGGGG---------------U-------------GCGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 121259 0.66 0.727087
Target:  5'- cGCCGggGUACUCgggcggggacaCGCgGCCCGGGgCCGCc -3'
miRNA:   3'- -CGGCa-CAUGGG-----------GUG-CGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 3715 0.66 0.727087
Target:  5'- cGCCcaaGUcccGCCCgGCGCUCAGGcCCAg -3'
miRNA:   3'- -CGGca-CA---UGGGgUGCGGGUCCaGGUg -5'
21602 3' -60.2 NC_004812.1 + 130074 0.66 0.727087
Target:  5'- cCCGUccGcACgCCACGCCCAGuUCCAg -3'
miRNA:   3'- cGGCA--CaUGgGGUGCGGGUCcAGGUg -5'
21602 3' -60.2 NC_004812.1 + 28448 0.66 0.727087
Target:  5'- cGCCGacgcaGcGCCgCGCGaCCC-GGUCCGCg -3'
miRNA:   3'- -CGGCa----CaUGGgGUGC-GGGuCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 56333 0.66 0.726132
Target:  5'- uCCGUGcucggcCCCCGgGCCCGGGUggcggacauccguUCGCa -3'
miRNA:   3'- cGGCACau----GGGGUgCGGGUCCA-------------GGUG- -5'
21602 3' -60.2 NC_004812.1 + 10858 0.66 0.717505
Target:  5'- cGUCGgGUcgcuccGCCCgCGCGcCCCGGGUcgCCGCg -3'
miRNA:   3'- -CGGCaCA------UGGG-GUGC-GGGUCCA--GGUG- -5'
21602 3' -60.2 NC_004812.1 + 4698 0.66 0.717505
Target:  5'- cGCCccaGaGCCCCGggcggcuguCGCCCAGG-CCGCc -3'
miRNA:   3'- -CGGca-CaUGGGGU---------GCGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 137213 0.66 0.717505
Target:  5'- gGCCGUG-ACCgCGCGCguccuggugccCCGGGgCUACg -3'
miRNA:   3'- -CGGCACaUGGgGUGCG-----------GGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 46402 0.66 0.717505
Target:  5'- uGCCGUcggcgucucGUGCagCGCGUCCAGGUacgCCGCc -3'
miRNA:   3'- -CGGCA---------CAUGggGUGCGGGUCCA---GGUG- -5'
21602 3' -60.2 NC_004812.1 + 1088 0.66 0.717505
Target:  5'- gGCCGcgGUcuccuccuGCCCgGCgGCCCGGGUCg-- -3'
miRNA:   3'- -CGGCa-CA--------UGGGgUG-CGGGUCCAGgug -5'
21602 3' -60.2 NC_004812.1 + 130206 0.66 0.717505
Target:  5'- cGCCccaGaGCCCCGggcggcuguCGCCCAGG-CCGCc -3'
miRNA:   3'- -CGGca-CaUGGGGU---------GCGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 42095 0.66 0.717505
Target:  5'- cGCCG---ACCCgaCGCGcCCCGGaGUCCGCc -3'
miRNA:   3'- -CGGCacaUGGG--GUGC-GGGUC-CAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 31989 0.66 0.717505
Target:  5'- gGCCGcgGUcuccuccuGCCCgGCgGCCCGGGUCg-- -3'
miRNA:   3'- -CGGCa-CA--------UGGGgUG-CGGGUCCAGgug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.