Results 81 - 100 of 286 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21602 | 3' | -60.2 | NC_004812.1 | + | 130537 | 0.66 | 0.713653 |
Target: 5'- gGCCGacgACCCCGgGCCgGGGgcgcgcgagggcgCCGCg -3' miRNA: 3'- -CGGCacaUGGGGUgCGGgUCCa------------GGUG- -5' |
|||||||
21602 | 3' | -60.2 | NC_004812.1 | + | 5028 | 0.66 | 0.713653 |
Target: 5'- gGCCGacgACCCCGgGCCgGGGgcgcgcgagggcgCCGCg -3' miRNA: 3'- -CGGCacaUGGGGUgCGGgUCCa------------GGUG- -5' |
|||||||
21602 | 3' | -60.2 | NC_004812.1 | + | 73590 | 0.67 | 0.707855 |
Target: 5'- -aCGaGUACCUCACGaCCAGGgaCCGCg -3' miRNA: 3'- cgGCaCAUGGGGUGCgGGUCCa-GGUG- -5' |
|||||||
21602 | 3' | -60.2 | NC_004812.1 | + | 93851 | 0.67 | 0.707855 |
Target: 5'- uGCCGcGUcggaccaggACCCCgguGCGaucCCCGGGUCCGg -3' miRNA: 3'- -CGGCaCA---------UGGGG---UGC---GGGUCCAGGUg -5' |
|||||||
21602 | 3' | -60.2 | NC_004812.1 | + | 99191 | 0.67 | 0.707855 |
Target: 5'- cCCGUGgugccGCCCgGC-CCCcGGUCCAg -3' miRNA: 3'- cGGCACa----UGGGgUGcGGGuCCAGGUg -5' |
|||||||
21602 | 3' | -60.2 | NC_004812.1 | + | 44617 | 0.67 | 0.707855 |
Target: 5'- cGCCagcc-CCCCGCGCUUGGGgggCCGCg -3' miRNA: 3'- -CGGcacauGGGGUGCGGGUCCa--GGUG- -5' |
|||||||
21602 | 3' | -60.2 | NC_004812.1 | + | 88420 | 0.67 | 0.706887 |
Target: 5'- gGCCGggcGUccggcgcGCCCC-CGCCCGcGG-CCGCc -3' miRNA: 3'- -CGGCa--CA-------UGGGGuGCGGGU-CCaGGUG- -5' |
|||||||
21602 | 3' | -60.2 | NC_004812.1 | + | 13828 | 0.67 | 0.698145 |
Target: 5'- aGCCGggcGUACUCC-CGCa-GGGUCCGg -3' miRNA: 3'- -CGGCa--CAUGGGGuGCGggUCCAGGUg -5' |
|||||||
21602 | 3' | -60.2 | NC_004812.1 | + | 51551 | 0.67 | 0.698145 |
Target: 5'- gGCCaGUGUGCgCCCGCGgCCGGaG-CgGCg -3' miRNA: 3'- -CGG-CACAUG-GGGUGCgGGUC-CaGgUG- -5' |
|||||||
21602 | 3' | -60.2 | NC_004812.1 | + | 143544 | 0.67 | 0.698145 |
Target: 5'- cGCCGUGaacgaggcgGCCCUggcGCGCCUGGG-CgACg -3' miRNA: 3'- -CGGCACa--------UGGGG---UGCGGGUCCaGgUG- -5' |
|||||||
21602 | 3' | -60.2 | NC_004812.1 | + | 101283 | 0.67 | 0.698145 |
Target: 5'- cGCCGca-GCUCCgACGCCCGGGcgucggcCCGCg -3' miRNA: 3'- -CGGCacaUGGGG-UGCGGGUCCa------GGUG- -5' |
|||||||
21602 | 3' | -60.2 | NC_004812.1 | + | 60101 | 0.67 | 0.698145 |
Target: 5'- cCCGgGUGCCCgGgGCa-GGGUCCGCc -3' miRNA: 3'- cGGCaCAUGGGgUgCGggUCCAGGUG- -5' |
|||||||
21602 | 3' | -60.2 | NC_004812.1 | + | 106874 | 0.67 | 0.698145 |
Target: 5'- cGCCGcg-ACCCCGaccccgucggcCGUCCGGcGUCUACg -3' miRNA: 3'- -CGGCacaUGGGGU-----------GCGGGUC-CAGGUG- -5' |
|||||||
21602 | 3' | -60.2 | NC_004812.1 | + | 93558 | 0.67 | 0.698145 |
Target: 5'- uGCCGUcccgCCCGCGCCCcaggcGGUaCCACc -3' miRNA: 3'- -CGGCAcaugGGGUGCGGGu----CCA-GGUG- -5' |
|||||||
21602 | 3' | -60.2 | NC_004812.1 | + | 138842 | 0.67 | 0.695222 |
Target: 5'- -gCGUGUccccgcaggACCCCGCGguacCCCAGGacauggccuacgucUCCGCg -3' miRNA: 3'- cgGCACA---------UGGGGUGC----GGGUCC--------------AGGUG- -5' |
|||||||
21602 | 3' | -60.2 | NC_004812.1 | + | 5271 | 0.67 | 0.688383 |
Target: 5'- cGCCGcg-GCCCCGCGCUC-GG-CCGa -3' miRNA: 3'- -CGGCacaUGGGGUGCGGGuCCaGGUg -5' |
|||||||
21602 | 3' | -60.2 | NC_004812.1 | + | 130779 | 0.67 | 0.688383 |
Target: 5'- cGCCGcg-GCCCCGCGCUC-GG-CCGa -3' miRNA: 3'- -CGGCacaUGGGGUGCGGGuCCaGGUg -5' |
|||||||
21602 | 3' | -60.2 | NC_004812.1 | + | 45183 | 0.67 | 0.688383 |
Target: 5'- gGCgCGUGcgucaCCCAgGCCCGGGagCGCa -3' miRNA: 3'- -CG-GCACaug--GGGUgCGGGUCCagGUG- -5' |
|||||||
21602 | 3' | -60.2 | NC_004812.1 | + | 94098 | 0.67 | 0.688383 |
Target: 5'- cGCuCGcGUGCgCCCugGCCCuGGUgCGg -3' miRNA: 3'- -CG-GCaCAUG-GGGugCGGGuCCAgGUg -5' |
|||||||
21602 | 3' | -60.2 | NC_004812.1 | + | 67647 | 0.67 | 0.688383 |
Target: 5'- gGCUGgg-GCCCCugGCCgCcGG-CCGCg -3' miRNA: 3'- -CGGCacaUGGGGugCGG-GuCCaGGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home