miRNA display CGI


Results 41 - 60 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 3' -60.2 NC_004812.1 + 15990 0.67 0.688383
Target:  5'- cGCCGaccccgcgGCCCCGCGCCagcagCAGcUCCGCc -3'
miRNA:   3'- -CGGCaca-----UGGGGUGCGG-----GUCcAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 17893 0.68 0.619264
Target:  5'- cGCCGcgGgcCCgCCGCGCCCGcGGUCguCc -3'
miRNA:   3'- -CGGCa-CauGG-GGUGCGGGU-CCAGguG- -5'
21602 3' -60.2 NC_004812.1 + 18214 0.66 0.736592
Target:  5'- cCCcaGUACUCCGCGUCgAGGcgCCGCu -3'
miRNA:   3'- cGGcaCAUGGGGUGCGGgUCCa-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 18418 0.66 0.736592
Target:  5'- uCCGUGUcGCUguuccagaaCCACGCCCccgucuGGcUCCACa -3'
miRNA:   3'- cGGCACA-UGG---------GGUGCGGGu-----CC-AGGUG- -5'
21602 3' -60.2 NC_004812.1 + 18462 0.68 0.648977
Target:  5'- gGCgGgggGgcgcgGCCCCGCGCCCgcgGGGcCCAg -3'
miRNA:   3'- -CGgCa--Ca----UGGGGUGCGGG---UCCaGGUg -5'
21602 3' -60.2 NC_004812.1 + 18585 0.68 0.619264
Target:  5'- cGCCGcc-GCaCCCGCGCCgGcggcgucccgggGGUCCACg -3'
miRNA:   3'- -CGGCacaUG-GGGUGCGGgU------------CCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 19052 0.7 0.484351
Target:  5'- gGCCGcGgcgGCCgagaCCGCgGCCCAGGcCCGCg -3'
miRNA:   3'- -CGGCaCa--UGG----GGUG-CGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 19802 0.69 0.589631
Target:  5'- gGCCGcucGgcccACCUCGCGCuCCAGGgCCACc -3'
miRNA:   3'- -CGGCa--Ca---UGGGGUGCG-GGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 20264 0.66 0.727087
Target:  5'- cGCCGUGUuuuucggucgugucGCCCCucgagugcgcgagcgGuccugacguccagCGCCCGGGgCCGCg -3'
miRNA:   3'- -CGGCACA--------------UGGGG---------------U-------------GCGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 20964 0.67 0.659855
Target:  5'- cGCCGUGgggacgcgcaggcagGCCuCCAgcaGCaCCAGGUgCACg -3'
miRNA:   3'- -CGGCACa--------------UGG-GGUg--CG-GGUCCAgGUG- -5'
21602 3' -60.2 NC_004812.1 + 21052 0.69 0.579803
Target:  5'- aCCGU--GCCCCGCcugugGCCgGGGUCCGa -3'
miRNA:   3'- cGGCAcaUGGGGUG-----CGGgUCCAGGUg -5'
21602 3' -60.2 NC_004812.1 + 21495 0.66 0.764562
Target:  5'- ------cACCCCAC-CCCAGGcCCACc -3'
miRNA:   3'- cggcacaUGGGGUGcGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 21677 0.7 0.512304
Target:  5'- gGCUGgg-ACCCCuCGUCCgAGGUCCAa -3'
miRNA:   3'- -CGGCacaUGGGGuGCGGG-UCCAGGUg -5'
21602 3' -60.2 NC_004812.1 + 21948 0.72 0.405341
Target:  5'- gGCCGUGguacACgCCACGCCguGGUgcUCGCg -3'
miRNA:   3'- -CGGCACa---UGgGGUGCGGguCCA--GGUG- -5'
21602 3' -60.2 NC_004812.1 + 22696 0.72 0.413719
Target:  5'- cCCGcGUcCCCCcCGCCCGGGguuaCCACg -3'
miRNA:   3'- cGGCaCAuGGGGuGCGGGUCCa---GGUG- -5'
21602 3' -60.2 NC_004812.1 + 23235 0.67 0.677595
Target:  5'- cCCGggggGUGCugagcgggaccuaCCUGCG-CCAGGUCCACg -3'
miRNA:   3'- cGGCa---CAUG-------------GGGUGCgGGUCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 24490 0.65 0.770044
Target:  5'- gGCCGcuccuggacggggGgcCCCCGCGCCgCGGGggCUGCg -3'
miRNA:   3'- -CGGCa------------CauGGGGUGCGG-GUCCa-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 25166 0.7 0.531303
Target:  5'- cGCCG-GUcgcCCCCGCGCuCCGGGgcggcgUCGCg -3'
miRNA:   3'- -CGGCaCAu--GGGGUGCG-GGUCCa-----GGUG- -5'
21602 3' -60.2 NC_004812.1 + 25624 0.74 0.30666
Target:  5'- cGCCGUGU-CCCCGCGCCagcuGGcCCuGCu -3'
miRNA:   3'- -CGGCACAuGGGGUGCGGgu--CCaGG-UG- -5'
21602 3' -60.2 NC_004812.1 + 25782 0.69 0.57001
Target:  5'- gGCCGUcGUcaGCCCC-CGCCgcagcaGGGcCCACa -3'
miRNA:   3'- -CGGCA-CA--UGGGGuGCGGg-----UCCaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.